KEGG   PATHWAY: aar00020
Entry
aar00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acetohalobium arabaticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aar00020  Citrate cycle (TCA cycle)
aar00020

Module
aar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aar00020]
aar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aar00020]
Other DBs
GO: 0006099
Organism
Acetohalobium arabaticum [GN:aar]
Gene
Acear_0522  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Acear_2049  Aconitase B, N-terminal [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Acear_2053  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
Acear_0640  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Acear_0454  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Acear_0455  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Acear_0456  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
Acear_0453  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Acear_0484  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Acear_0520  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Acear_0485  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Acear_0521  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Acear_0036  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Acear_0037  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Acear_0034  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Acear_0035  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aar00010  Glycolysis / Gluconeogenesis
aar00061  Fatty acid biosynthesis
aar00071  Fatty acid degradation
aar00190  Oxidative phosphorylation
aar00220  Arginine biosynthesis
aar00250  Alanine, aspartate and glutamate metabolism
aar00280  Valine, leucine and isoleucine degradation
aar00350  Tyrosine metabolism
aar00470  D-Amino acid metabolism
aar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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