KEGG   PATHWAY: adl00020
Entry
adl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Auricularia subglabra
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
adl00020  Citrate cycle (TCA cycle)
adl00020

Module
adl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:adl00020]
adl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:adl00020]
adl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:adl00020]
adl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:adl00020]
adl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:adl00020]
Other DBs
GO: 0006099
Organism
Auricularia subglabra [GN:adl]
Gene
AURDEDRAFT_116705  peroxysomal citrate synthase [KO:K01647] [EC:2.3.3.1]
AURDEDRAFT_88022  citrate synthase [KO:K01647] [EC:2.3.3.1]
AURDEDRAFT_110786  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
AURDEDRAFT_112753  citrate synthase [KO:K01647] [EC:2.3.3.1]
AURDEDRAFT_110253  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
AURDEDRAFT_114473  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AURDEDRAFT_189035  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AURDEDRAFT_133307  hypothetical protein [KO:K00030] [EC:1.1.1.41]
AURDEDRAFT_182254  2-oxoglutarate dehydrogenase complex E1 component mitochondrial precursor [KO:K00164] [EC:1.2.4.2]
AURDEDRAFT_112937  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AURDEDRAFT_109677  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AURDEDRAFT_109719  succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
AURDEDRAFT_109786  succinate-CoA ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
AURDEDRAFT_111947  succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
AURDEDRAFT_115303  succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
AURDEDRAFT_112784  cytochrome b560 subunit of succinate dehydrogenase [KO:K00236]
AURDEDRAFT_115600  hypothetical protein [KO:K00237]
AURDEDRAFT_114629  hypothetical protein [KO:K00237]
AURDEDRAFT_111598  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AURDEDRAFT_174727  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
AURDEDRAFT_117202  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
AURDEDRAFT_113254  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AURDEDRAFT_116763  hypothetical protein [KO:K01610] [EC:4.1.1.49]
AURDEDRAFT_110977  mitochondrial pyruvate dehydrogenase E1 component beta subunit [KO:K00161] [EC:1.2.4.1]
AURDEDRAFT_52884  Thiamin diphosphate-binding protein [KO:K00162] [EC:1.2.4.1]
AURDEDRAFT_181666  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
adl00010  Glycolysis / Gluconeogenesis
adl00053  Ascorbate and aldarate metabolism
adl00061  Fatty acid biosynthesis
adl00062  Fatty acid elongation
adl00071  Fatty acid degradation
adl00190  Oxidative phosphorylation
adl00220  Arginine biosynthesis
adl00250  Alanine, aspartate and glutamate metabolism
adl00280  Valine, leucine and isoleucine degradation
adl00350  Tyrosine metabolism
adl00470  D-Amino acid metabolism
adl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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