KEGG   PATHWAY: aflo00020
Entry
aflo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aphanizomenon flos-aquae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aflo00020  Citrate cycle (TCA cycle)
aflo00020

Module
aflo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aflo00020]
aflo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aflo00020]
Other DBs
GO: 0006099
Organism
Aphanizomenon flos-aquae [GN:aflo]
Gene
HEQ12_11710  citrate synthase [KO:K01659] [EC:2.3.3.5]
HEQ12_18745  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HEQ12_07240  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HEQ12_05505  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HEQ12_06350  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
HEQ12_06355  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HEQ12_00780  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HEQ12_17085  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HEQ12_20460  heterodisulfide reductase [KO:K00241]
HEQ12_06245  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HEQ12_14155  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HEQ12_08095  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HEQ12_10730  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
HEQ12_11580  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aflo00010  Glycolysis / Gluconeogenesis
aflo00053  Ascorbate and aldarate metabolism
aflo00061  Fatty acid biosynthesis
aflo00071  Fatty acid degradation
aflo00190  Oxidative phosphorylation
aflo00220  Arginine biosynthesis
aflo00250  Alanine, aspartate and glutamate metabolism
aflo00280  Valine, leucine and isoleucine degradation
aflo00350  Tyrosine metabolism
aflo00470  D-Amino acid metabolism
aflo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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