KEGG   PATHWAY: aper00020
Entry
aper00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acetobacter persici
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aper00020  Citrate cycle (TCA cycle)
aper00020

Module
aper_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aper00020]
aper_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aper00020]
aper_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aper00020]
aper_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aper00020]
Other DBs
GO: 0006099
Organism
Acetobacter persici [GN:aper]
Gene
A0U91_02840  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A0U91_07565  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A0U91_05120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A0U91_02965  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
A0U91_04265  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
A0U91_04260  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A0U91_04255  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0U91_02050  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0U91_02820  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
A0U91_08605  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A0U91_08610  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A0U91_08595  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A0U91_08600  succinate dehydrogenase [KO:K00242]
A0U91_07485  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A0U91_03015  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A0U91_02375  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A0U91_02035  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A0U91_02040  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
A0U91_05495  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
A0U91_02045  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
A0U91_00350  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aper00010  Glycolysis / Gluconeogenesis
aper00053  Ascorbate and aldarate metabolism
aper00061  Fatty acid biosynthesis
aper00190  Oxidative phosphorylation
aper00220  Arginine biosynthesis
aper00250  Alanine, aspartate and glutamate metabolism
aper00280  Valine, leucine and isoleucine degradation
aper00350  Tyrosine metabolism
aper00470  D-Amino acid metabolism
aper00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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