KEGG   PATHWAY: aru00020
Entry
aru00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arthrobacter sp. U41
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aru00020  Citrate cycle (TCA cycle)
aru00020

Module
aru_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aru00020]
aru_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aru00020]
aru_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aru00020]
aru_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aru00020]
aru_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aru00020]
Other DBs
GO: 0006099
Organism
Arthrobacter sp. U41 [GN:aru]
Gene
ASPU41_00075  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
ASPU41_13505  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ASPU41_10810  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
ASPU41_19200  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ASPU41_13350  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ASPU41_09600  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ASPU41_09595  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ASPU41_10955  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ASPU41_10950  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ASPU41_10965  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
ASPU41_10960  succinate dehydrogenase [KO:K00242]
ASPU41_11215  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
ASPU41_18650  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ASPU41_13045  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ASPU41_08955  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
ASPU41_18005  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ASPU41_08220  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ASPU41_08215  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
ASPU41_08210  dehydrogenase [KO:K00627] [EC:2.3.1.12]
ASPU41_13345  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aru00010  Glycolysis / Gluconeogenesis
aru00061  Fatty acid biosynthesis
aru00071  Fatty acid degradation
aru00190  Oxidative phosphorylation
aru00220  Arginine biosynthesis
aru00250  Alanine, aspartate and glutamate metabolism
aru00280  Valine, leucine and isoleucine degradation
aru00350  Tyrosine metabolism
aru00470  D-Amino acid metabolism
aru00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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