KEGG   PATHWAY: arut00630
Entry
arut00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Acipenser ruthenus (sterlet)
Class
Metabolism; Carbohydrate metabolism
Pathway map
arut00630  Glyoxylate and dicarboxylate metabolism
arut00630

Module
arut_M00621  Glycine cleavage system [PATH:arut00630]
arut_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:arut00630]
Other DBs
GO: 0046487 0043648
Organism
Acipenser ruthenus (sterlet) [GN:arut]
Gene
117433288  acetyl-coenzyme A synthetase, cytoplasmic-like isoform X1 [KO:K01895] [EC:6.2.1.1]
117399642  acss2l; acyl-CoA synthetase short chain family member 2 like [KO:K01895] [EC:6.2.1.1]
117418781  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
117422690  acetyl-coenzyme A synthetase, cytoplasmic-like isoform X1 [KO:K01895] [EC:6.2.1.1]
117410740  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X1 [KO:K01895] [EC:6.2.1.1]
117403330  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
117422596  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
117411155  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
117402977  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
117430371  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
117971062  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
117401014  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
117969625  LOW QUALITY PROTEIN: aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
117432520  LOW QUALITY PROTEIN: aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
117421299  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
117406855  acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
117410743  acat2; acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
117405484  acetyl-CoA acetyltransferase, mitochondrial-like [KO:K00626] [EC:2.3.1.9]
117428198  methylmalonyl-CoA epimerase, mitochondrial-like [KO:K05606] [EC:5.1.99.1]
117429709  methylmalonyl-CoA epimerase, mitochondrial-like [KO:K05606] [EC:5.1.99.1]
117406085  propionyl-CoA carboxylase alpha chain, mitochondrial-like isoform X2 [KO:K01965] [EC:6.4.1.3]
117417096  pccb; propionyl-CoA carboxylase beta chain, mitochondrial isoform X1 [KO:K01966] [EC:6.4.1.3 2.1.3.15]
117423166  propionyl-CoA carboxylase beta chain, mitochondrial-like [KO:K01966] [EC:6.4.1.3 2.1.3.15]
117411429  mut; methylmalonyl-CoA mutase, mitochondrial [KO:K01847] [EC:5.4.99.2]
117406358  hydroxyacid oxidase 2-like [KO:K11517] [EC:1.1.3.15]
117407110  hydroxyacid oxidase 2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
117411532  hao1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
117432372  catalase-like [KO:K03781] [EC:1.11.1.6]
117434896  catalase-like [KO:K03781] [EC:1.11.1.6]
117420848  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
117421534  glyoxylate reductase/hydroxypyruvate reductase-like isoform X1 [KO:K00049] [EC:1.1.1.79 1.1.1.81]
117417817  pgp; glycerol-3-phosphate phosphatase [KO:K19269] [EC:3.1.3.18 3.1.3.48]
117431254  glycerol-3-phosphate phosphatase-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
117417217  serine--pyruvate aminotransferase, mitochondrial [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
117423424  serine--pyruvate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
117973963  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
117417421  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
117410715  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
117396912  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
117973744  shmt1; serine hydroxymethyltransferase, cytosolic [KO:K00600] [EC:2.1.2.1]
117966997  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
117401100  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
117411679  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
117409562  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
117411868  aminomethyltransferase, mitochondrial isoform X1 [KO:K00605] [EC:2.1.2.10]
117962420  aminomethyltransferase, mitochondrial-like isoform X1 [KO:K00605] [EC:2.1.2.10]
117419633  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
117414892  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
117424729  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
117425421  gcshb; glycine cleavage system protein H (aminomethyl carrier), b [KO:K02437]
117407423  hyi; putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
117412255  glycerate kinase [KO:K11529] [EC:2.7.1.165]
117963513  glycerate kinase-like [KO:K11529] [EC:2.7.1.165]
117415418  hoga1; 4-hydroxy-2-oxoglutarate aldolase, mitochondrial [KO:K18123] [EC:4.1.3.16]
117423180  afmid; kynurenine formamidase isoform X1 [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
arut00010  Glycolysis / Gluconeogenesis
arut00020  Citrate cycle (TCA cycle)
arut00030  Pentose phosphate pathway
arut00053  Ascorbate and aldarate metabolism
arut00071  Fatty acid degradation
arut00230  Purine metabolism
arut00250  Alanine, aspartate and glutamate metabolism
arut00260  Glycine, serine and threonine metabolism
arut00620  Pyruvate metabolism
arut00750  Vitamin B6 metabolism
arut00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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