KEGG   PATHWAY: asd00020
Entry
asd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hoyosella subflava
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asd00020  Citrate cycle (TCA cycle)
asd00020

Module
asd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asd00020]
asd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asd00020]
asd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asd00020]
asd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asd00020]
asd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asd00020]
Other DBs
GO: 0006099
Organism
Hoyosella subflava [GN:asd]
Gene
AS9A_0852  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AS9A_0854  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
AS9A_1914  Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AS9A_4500  acnA1; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AS9A_3985  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AS9A_4460  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AS9A_3326  2-oxoglutarate dehydrogenase, E1 and E2 components [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AS9A_0593  dldH1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AS9A_4223  dldH2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AS9A_1023  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AS9A_1024  korB; 2-oxoglutarate ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AS9A_3582  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AS9A_3583  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AS9A_3919  sdhA; Putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AS9A_3920  sdhB; Succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AS9A_3917  sdhC; Succinate dehydrogenase cytochrome b subunit [KO:K00241]
AS9A_3918  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
AS9A_2960  frdA; fumarate reductase flavoprotein subunit frdA [KO:K00244] [EC:1.3.5.1]
AS9A_2959  frdBC; putative fumarate reductase [KO:K00245] [EC:1.3.5.1]
AS9A_2958  Fumarate reductase subunit C [KO:K00246]
AS9A_2957  frdD; Fumarate reductase subunit D [KO:K00247]
AS9A_3404  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AS9A_1608  putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AS9A_3162  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AS9A_4130  pckA; Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AS9A_1227  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AS9A_4230  Alpha/beta hydrolase fold protein [KO:K00627] [EC:2.3.1.12]
AS9A_1262  Dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asd00010  Glycolysis / Gluconeogenesis
asd00053  Ascorbate and aldarate metabolism
asd00061  Fatty acid biosynthesis
asd00071  Fatty acid degradation
asd00190  Oxidative phosphorylation
asd00220  Arginine biosynthesis
asd00250  Alanine, aspartate and glutamate metabolism
asd00280  Valine, leucine and isoleucine degradation
asd00350  Tyrosine metabolism
asd00470  D-Amino acid metabolism
asd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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