KEGG   PATHWAY: asun00020
Entry
asun00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Arthrobacter sunyaminii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asun00020  Citrate cycle (TCA cycle)
asun00020

Module
asun_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asun00020]
asun_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asun00020]
asun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asun00020]
asun_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asun00020]
asun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asun00020]
Other DBs
GO: 0006099
Organism
Arthrobacter sunyaminii [GN:asun]
Gene
KG104_06570  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
KG104_13785  citrate synthase [KO:K01647] [EC:2.3.3.1]
KG104_03500  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KG104_07330  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KG104_04475  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KG104_13015  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KG104_07125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KG104_10075  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KG104_02680  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KG104_02675  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KG104_02415  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KG104_04605  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KG104_04600  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KG104_04615  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KG104_04610  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
KG104_04835  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KG104_12510  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KG104_06720  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KG104_01795  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KG104_11815  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KG104_07120  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asun00010  Glycolysis / Gluconeogenesis
asun00053  Ascorbate and aldarate metabolism
asun00061  Fatty acid biosynthesis
asun00071  Fatty acid degradation
asun00190  Oxidative phosphorylation
asun00220  Arginine biosynthesis
asun00250  Alanine, aspartate and glutamate metabolism
asun00280  Valine, leucine and isoleucine degradation
asun00350  Tyrosine metabolism
asun00470  D-Amino acid metabolism
asun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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