KEGG   PATHWAY: ata00630
Entry
ata00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Agrobacterium tumefaciens S33
Class
Metabolism; Carbohydrate metabolism
Pathway map
ata00630  Glyoxylate and dicarboxylate metabolism
ata00630

Module
ata_M00012  Glyoxylate cycle [PATH:ata00630]
ata_M00621  Glycine cleavage system [PATH:ata00630]
ata_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ata00630]
Other DBs
GO: 0046487 0043648
Organism
Agrobacterium tumefaciens S33 [GN:ata]
Gene
AWN88_22395  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AWN88_18585  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AWN88_19265  malate synthase G [KO:K01638] [EC:2.3.3.9]
AWN88_18075  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWN88_12245  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWN88_18305  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AWN88_11060  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AWN88_17545  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AWN88_21875  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AWN88_18700  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AWN88_18705  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AWN88_08570  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
AWN88_08560  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
AWN88_08540  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
AWN88_06580  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
AWN88_08565  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AWN88_22955  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AWN88_22960  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
AWN88_22965  2-hydroxy-acid oxidase [KO:K11473] [EC:1.1.99.14]
AWN88_02030  catalase [KO:K03781] [EC:1.11.1.6]
AWN88_20010  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
AWN88_05600  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AWN88_04015  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AWN88_06940  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
AWN88_13090  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
AWN88_23130  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
AWN88_12655  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AWN88_20555  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AWN88_13785  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AWN88_22365  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AWN88_15665  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AWN88_25410  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AWN88_12700  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
AWN88_12690  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AWN88_18040  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWN88_12320  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWN88_12695  glycine cleavage system protein H [KO:K02437]
AWN88_10610  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
AWN88_03045  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
AWN88_04030  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AWN88_00325  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AWN88_10130  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AWN88_01795  cupin [KO:K01569] [EC:4.1.1.2]
AWN88_02170  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
AWN88_02175  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AWN88_02180  formate dehydrogenase [KO:K00124]
AWN88_02185  formate dehydrogenase [KO:K00127]
AWN88_17185  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AWN88_09455  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AWN88_06670  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ata00010  Glycolysis / Gluconeogenesis
ata00020  Citrate cycle (TCA cycle)
ata00030  Pentose phosphate pathway
ata00053  Ascorbate and aldarate metabolism
ata00071  Fatty acid degradation
ata00230  Purine metabolism
ata00250  Alanine, aspartate and glutamate metabolism
ata00260  Glycine, serine and threonine metabolism
ata00620  Pyruvate metabolism
ata00710  Carbon fixation by Calvin cycle
ata00750  Vitamin B6 metabolism
ata00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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