KEGG   PATHWAY: ath04130
Entry
ath04130                    Pathway                                
Name
SNARE interactions in vesicular transport - Arabidopsis thaliana (thale cress)
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ath04130  SNARE interactions in vesicular transport
ath04130

Organism
Arabidopsis thaliana (thale cress) [GN:ath]
Gene
AT1G04750  VAMP721; vesicle-associated membrane protein 721 [KO:K08515]
AT1G04760  VAMP726; vesicle-associated membrane protein 726 [KO:K08515]
AT1G08560  SYP111; syntaxin of plants 111 [KO:K08486]
AT1G11250  SYP125; syntaxin of plants 125 [KO:K08486]
AT1G11890  SEC22; Synaptobrevin family protein [KO:K08517]
AT1G15880  GOS11; golgi snare 11 [KO:K08495]
AT1G16225  [KO:K08503]
AT1G16230  [KO:K08503]
AT1G16240  SYP51; syntaxin of plants 51 [KO:K08503]
AT1G26670  VTI1B; Vesicle transport v-SNARE family protein [KO:K08493]
AT1G28490  SYP61; syntaxin of plants 61 [KO:K08500]
AT1G29060  [KO:K08505]
AT1G51740  SYP81; syntaxin of plants 81 [KO:K08492]
AT1G54110  [KO:K08507]
AT1G61290  SYP124; syntaxin of plants 124 [KO:K08486]
AT1G79590  SYP52; syntaxin of plants 52 [KO:K08503]
AT2G18260  SYP112; syntaxin of plants 112 [KO:K08486]
AT2G25340  VAMP712; vesicle-associated membrane protein 712 [KO:K08515]
AT2G32670  VAMP725; vesicle-associated membrane protein 725 [KO:K08515]
AT2G33110  VAMP723; vesicle-associated membrane protein 723 [KO:K08515]
AT2G33120  SAR1; synaptobrevin-related protein 1 [KO:K08515]
AT2G36900  MEMB11; membrin 11 [KO:K08496]
AT2G45200  GOS12; golgi snare 12 [KO:K08495]
AT3G03800  SYP131; syntaxin of plants 131 [KO:K08486]
AT3G05710  SYP43; syntaxin of plants 43 [KO:K08489]
AT3G09740  SYP71; syntaxin of plants 71 [KO:K08506]
AT3G11820  SYP121; syntaxin of plants 121 [KO:K08486]
AT3G24315  AtSec20; Sec20 family protein [KO:K08497]
AT3G24350  SYP32; syntaxin of plants 32 [KO:K08490]
AT3G24890  VAMP728; vesicle-associated membrane protein 728 [KO:K08515]
AT3G29100  VTI13; vesicle transport V-snare 13 [KO:K08493]
AT3G45280  SYP72; syntaxin of plants 72 [KO:K08506]
AT3G52400  SYP122; syntaxin of plants 122 [KO:K08486]
AT3G54300  VAMP727; vesicle-associated membrane protein 727 [KO:K08515]
AT3G55600  [KO:K08507]
AT3G58170  BS14A; BET1P/SFT1P-like protein 14A [KO:K08504]
AT3G61450  SYP73; syntaxin of plants 73 [KO:K08506]
AT4G02195  SYP42; syntaxin of plants 42 [KO:K08489]
AT4G03330  SYP123; syntaxin of plants 123 [KO:K08486]
AT4G14455  ATBET12; Target SNARE coiled-coil domain protein [KO:K08504]
AT4G14600  [KO:K08505]
AT4G15780  VAMP724; vesicle-associated membrane protein 724 [KO:K08515]
AT4G32150  VAMP711; vesicle-associated membrane protein 711 [KO:K08515]
AT5G05760  SYP31; syntaxin of plants 31 [KO:K08490]
AT5G07880  SNAP29; synaptosomal-associated protein SNAP25-like 29 [KO:K08509]
AT5G08080  SYP132; syntaxin of plants 132 [KO:K08486]
AT5G11150  VAMP713; vesicle-associated membrane protein 713 [KO:K08515]
AT5G22360  VAMP714; vesicle-associated membrane protein 714 [KO:K08515]
AT5G26980  SYP41; syntaxin of plants 41 [KO:K08489]
AT5G39510  SGR4; Vesicle transport v-SNARE family protein [KO:K08493]
AT5G39630  [KO:K08493]
AT5G50440  MEMB12; membrin 12 [KO:K08496]
AT5G52270  [KO:K08517]
AT5G58060  YKT61; SNARE-like superfamily protein [KO:K08516]
AT5G58180  ATYKT62; Synaptobrevin family protein [KO:K08516]
Reference
  Authors
Yoshizawa AC, Kawashima S, Okuda S, Fujita M, Itoh M, Moriya Y, Hattori M, Kanehisa M
  Title
Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.
  Journal
Traffic 7:1104-18 (2006)
DOI:10.1111/j.1600-0854.2006.00451.x
Reference
  Authors
Scales SJ, Chen YA, Yoo BY, Patel SM, Doung YC, Scheller RH.
  Title
SNAREs contribute to the specificity of membrane fusion.
  Journal
Neuron 26:457-64 (2000)
DOI:10.1016/S0896-6273(00)81177-0
Reference
  Authors
Teng FY, Wang Y, Tang BL.
  Title
The syntaxins.
  Journal
Genome Biol 2:REVIEWS3012 (2001)
DOI:10.1186/gb-2001-2-11-reviews3012
Reference
  Authors
Sanderfoot AA, Assaad FF, Raikhel NV.
  Title
The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors.
  Journal
Plant Physiol 124:1558-69 (2000)
DOI:10.1104/pp.124.4.1558
Reference
  Authors
Uemura T, Ueda T, Ohniwa RL, Nakano A, Takeyasu K, Sato MH.
  Title
Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells.
  Journal
Cell Struct Funct 29:49-65 (2004)
DOI:10.1247/csf.29.49
Reference
  Authors
Jahn R, Sudhof TC.
  Title
Membrane fusion and exocytosis.
  Journal
Annu Rev Biochem 68:863-911 (1999)
DOI:10.1146/annurev.biochem.68.1.863
Reference
  Authors
Pelham HR.
  Title
SNAREs and the specificity of membrane fusion.
  Journal
Trends Cell Biol 11:99-101 (2001)
DOI:10.1016/S0962-8924(01)01929-8
Reference
  Authors
Armstrong J
  Title
Membrane traffic between genomes.
  Journal
Genome Biol 1:REVIEWS104 (2000)
DOI:10.1186/gb-2000-1-1-reviews104
Reference
  Authors
Bock JB, Matern HT, Peden AA, Scheller RH.
  Title
A genomic perspective on membrane compartment organization.
  Journal
Nature 409:839-41 (2001)
DOI:10.1038/35057024
Reference
  Authors
Chen YA, Scheller RH.
  Title
SNARE-mediated membrane fusion.
  Journal
Nat Rev Mol Cell Biol 2:98-106 (2001)
DOI:10.1038/35052017
Reference
PMID:9763449
  Authors
Seron K, Tieaho V, Prescianotto-Baschong C, Aust T, Blondel MO, Guillaud P, Devilliers G, Rossanese OW, Glick BS, Riezman H, Keranen S, Haguenauer-Tsapis R.
  Title
A yeast t-SNARE involved in endocytosis.
  Journal
Mol Biol Cell 9:2873-89 (1998)
DOI:10.1091/mbc.9.10.2873
Reference
  Authors
Sanderfoot AA, Raikhel NV.
  Title
The specificity of vesicle trafficking: coat proteins and SNAREs.
  Journal
Plant Cell 11:629-42 (1999)
DOI:10.1105/tpc.11.4.629
Reference
PMID:9565594
  Authors
Abeliovich H, Grote E, Novick P, Ferro-Novick S.
  Title
Tlg2p, a yeast syntaxin homolog that resides on the Golgi and endocytic structures.
  Journal
J Biol Chem 273:11719-27 (1998)
DOI:10.1074/jbc.273.19.11719
Reference
PMID:9553086
  Authors
Advani RJ, Bae HR, Bock JB, Chao DS, Doung YC, Prekeris R, Yoo JS, Scheller RH.
  Title
Seven novel mammalian SNARE proteins localize to distinct membrane compartments.
  Journal
J Biol Chem 273:10317-24 (1998)
DOI:10.1074/jbc.273.17.10317
Reference
  Authors
Advani RJ, Yang B, Prekeris R, Lee KC, Klumperman J, Scheller RH.
  Title
VAMP-7 mediates vesicular transport from endosomes to lysosomes.
  Journal
J Cell Biol 146:765-76 (1999)
DOI:10.1083/jcb.146.4.765
Reference
  Authors
Burri L, Varlamov O, Doege CA, Hofmann K, Beilharz T, Rothman JE, Sollner TH, Lithgow T.
  Title
A SNARE required for retrograde transport to the endoplasmic reticulum.
  Journal
Proc Natl Acad Sci U S A 100:9873-7 (2003)
DOI:10.1073/pnas.1734000100
Reference
  Authors
Chao DS, Hay JC, Winnick S, Prekeris R, Klumperman J, Scheller RH.
  Title
SNARE membrane trafficking dynamics in vivo.
  Journal
J Cell Biol 144:869-81 (1999)
DOI:10.1083/jcb.144.5.869
Reference
  Authors
Coe JG, Lim AC, Xu J, Hong W.
  Title
A role for Tlg1p in the transport of proteins within the Golgi apparatus of Saccharomyces cerevisiae.
  Journal
Mol Biol Cell 10:2407-23 (1999)
DOI:10.1091/mbc.10.7.2407
Reference
  Authors
Dilcher M, Kohler B, von Mollard GF.
  Title
Genetic interactions with the yeast Q-SNARE VTI1 reveal novel functions for the R-SNARE YKT6.
  Journal
J Biol Chem 276:34537-44 (2001)
DOI:10.1074/jbc.M101551200
Reference
  Authors
Dilcher M, Veith B, Chidambaram S, Hartmann E, Schmitt HD, Fischer von Mollard G.
  Title
Use1p is a yeast SNARE protein required for retrograde traffic to the ER.
  Journal
EMBO J 22:3664-74 (2003)
DOI:10.1093/emboj/cdg339
Reference
PMID:9446565
  Authors
Fischer von Mollard G, Stevens TH.
  Title
A human homolog can functionally replace the yeast vesicle-associated SNARE Vti1p in two vesicle transport pathways.
  Journal
J Biol Chem 273:2624-30 (1998)
DOI:10.1074/jbc.273.5.2624
Reference
  Authors
Fischer von Mollard G, Stevens TH.
  Title
The Saccharomyces cerevisiae v-SNARE Vti1p is required for multiple membrane transport pathways to the vacuole.
  Journal
Mol Biol Cell 10:1719-32 (1999)
DOI:10.1091/mbc.10.6.1719
Reference
PMID:9614185
  Authors
Galli T, Zahraoui A, Vaidyanathan VV, Raposo G, Tian JM, Karin M, Niemann H, Louvard D.
  Title
A novel tetanus neurotoxin-insensitive vesicle-associated membrane protein in SNARE complexes of the apical plasma membrane of epithelial cells.
  Journal
Mol Biol Cell 9:1437-48 (1998)
DOI:10.1091/mbc.9.6.1437
Reference
  Authors
Gerrard SR, Mecklem AB, Stevens TH.
  Title
The yeast endosomal t-SNARE, Pep12p, functions in the absence of its transmembrane domain.
  Journal
Traffic 1:45-55 (2000)
DOI:10.1034/j.1600-0854.2000.010108.x
Reference
  Authors
Gerst JE.
  Title
SNAREs and SNARE regulators in membrane fusion and exocytosis.
  Journal
Cell Mol Life Sci 55:707-34 (1999)
DOI:10.1007/s000180050328
Reference
  Authors
Gurunathan S, Chapman-Shimshoni D, Trajkovic S, Gerst JE.
  Title
Yeast exocytic v-SNAREs confer endocytosis.
  Journal
Mol Biol Cell 11:3629-43 (2000)
DOI:10.1091/mbc.11.10.3629
Reference
  Authors
Hatsuzawa K, Hirose H, Tani K, Yamamoto A, Scheller RH, Tagaya M.
  Title
Syntaxin 18, a SNAP receptor that functions in the endoplasmic reticulum, intermediate compartment, and cis-Golgi vesicle trafficking.
  Journal
J Biol Chem 275:13713-20 (2000)
DOI:10.1074/jbc.275.18.13713
Reference
PMID:8621431
  Authors
Hay JC, Hirling H, Scheller RH.
  Title
Mammalian vesicle trafficking proteins of the endoplasmic reticulum and Golgi apparatus.
  Journal
J Biol Chem 271:5671-9 (1996)
DOI:10.1074/jbc.271.10.5671
Reference
PMID:9647643
  Authors
Hay JC, Klumperman J, Oorschot V, Steegmaier M, Kuo CS, Scheller RH.
  Title
Localization, dynamics, and protein interactions reveal distinct roles for ER and Golgi SNAREs.
  Journal
J Cell Biol 141:1489-502 (1998)
DOI:10.1083/jcb.141.7.1489
Reference
PMID:9427746
  Authors
Holthuis JC, Nichols BJ, Dhruvakumar S, Pelham HR.
  Title
Two syntaxin homologues in the TGN/endosomal system of yeast.
  Journal
EMBO J 17:113-26 (1998)
DOI:10.1093/emboj/17.1.113
Reference
PMID:9843576
  Authors
Holthuis JC, Nichols BJ, Pelham HR.
  Title
The syntaxin Tlg1p mediates trafficking of chitin synthase III to polarized growth sites in yeast.
  Journal
Mol Biol Cell 9:3383-97 (1998)
DOI:10.1091/mbc.9.12.3383
Reference
  Authors
Jahn R, Lang T, Sudhof TC.
  Title
Membrane fusion.
  Journal
Cell 112:519-33 (2003)
DOI:10.1016/S0092-8674(03)00112-0
Reference
  Authors
Lafont F, Verkade P, Galli T, Wimmer C, Louvard D, Simons K.
  Title
Raft association of SNAP receptors acting in apical trafficking in Madin-Darby canine kidney cells.
  Journal
Proc Natl Acad Sci U S A 96:3734-8 (1999)
DOI:10.1073/pnas.96.7.3734
Reference
PMID:9214619
  Authors
Lewis MJ, Rayner JC, Pelham HR.
  Title
A novel SNARE complex implicated in vesicle fusion with the endoplasmic reticulum.
  Journal
EMBO J 16:3017-24 (1997)
DOI:10.1093/emboj/16.11.3017
Reference
PMID:9647644
  Authors
Low SH, Chapin SJ, Wimmer C, Whiteheart SW, Komuves LG, Mostov KE, Weimbs T.
  Title
The SNARE machinery is involved in apical plasma membrane trafficking in MDCK cells.
  Journal
J Cell Biol 141:1503-13 (1998)
DOI:10.1083/jcb.141.7.1503
Reference
PMID:9452464
  Authors
Low SH, Roche PA, Anderson HA, van Ijzendoorn SC, Zhang M, Mostov KE, Weimbs T.
  Title
Targeting of SNAP-23 and SNAP-25 in polarized epithelial cells.
  Journal
J Biol Chem 273:3422-30 (1998)
DOI:10.1074/jbc.273.6.3422
Reference
  Authors
Mostov K, Su T, ter Beest M.
  Title
Polarized epithelial membrane traffic: conservation and plasticity.
  Journal
Nat Cell Biol 5:287-93 (2003)
DOI:10.1038/ncb0403-287
Reference
  Authors
Mostov KE, Verges M, Altschuler Y.
  Title
Membrane traffic in polarized epithelial cells.
  Journal
Curr Opin Cell Biol 12:483-90 (2000)
DOI:10.1016/S0955-0674(00)00120-4
Reference
  Authors
Mullock BM, Smith CW, Ihrke G, Bright NA, Lindsay M, Parkinson EJ, Brooks DA, Parton RG, James DE, Luzio JP, Piper RC.
  Title
Syntaxin 7 is localized to late endosome compartments, associates with Vamp 8, and Is required for late endosome-lysosome fusion.
  Journal
Mol Biol Cell 11:3137-53 (2000)
DOI:10.1091/mbc.11.9.3137
Reference
PMID:9817754
  Authors
Prekeris R, Klumperman J, Chen YA, Scheller RH.
  Title
Syntaxin 13 mediates cycling of plasma membrane proteins via tubulovesicular recycling endosomes.
  Journal
J Cell Biol 143:957-71 (1998)
DOI:10.1083/jcb.143.4.957
Reference
  Authors
Prekeris R, Yang B, Oorschot V, Klumperman J, Scheller RH.
  Title
Differential roles of syntaxin 7 and syntaxin 8 in endosomal trafficking.
  Journal
Mol Biol Cell 10:3891-908 (1999)
DOI:10.1091/mbc.10.11.3891
Reference
PMID:9707576
  Authors
Sanderfoot AA, Ahmed SU, Marty-Mazars D, Rapoport I, Kirchhausen T, Marty F, Raikhel NV.
  Title
A putative vacuolar cargo receptor partially colocalizes with AtPEP12p on a prevacuolar compartment in Arabidopsis roots.
  Journal
Proc Natl Acad Sci U S A 95:9920-5 (1998)
DOI:10.1073/pnas.95.17.9920
Reference
  Authors
Sanderfoot AA, Kovaleva V, Bassham DC, Raikhel NV.
  Title
Interactions between syntaxins identify at least five SNARE complexes within the Golgi/prevacuolar system of the Arabidopsis cell.
  Journal
Mol Biol Cell 12:3733-43 (2001)
DOI:10.1091/mbc.12.12.3733
Reference
  Authors
Sanderfoot AA, Kovaleva V, Zheng H, Raikhel NV.
  Title
The t-SNARE AtVAM3p resides on the prevacuolar compartment in Arabidopsis root cells.
  Journal
Plant Physiol 121:929-38 (1999)
DOI:10.1104/pp.121.3.929
Reference
  Authors
Sanderfoot AA, Pilgrim M, Adam L, Raikhel NV.
  Title
Disruption of individual members of Arabidopsis syntaxin gene families indicates each has essential functions.
  Journal
Plant Cell 13:659-66 (2001)
DOI:10.1105/tpc.13.3.659
Reference
PMID:9305917
  Authors
Sato MH, Nakamura N, Ohsumi Y, Kouchi H, Kondo M, Hara-Nishimura I, Nishimura M, Wada Y.
  Title
The AtVAM3 encodes a syntaxin-related molecule implicated in the vacuolar assembly in Arabidopsis thaliana.
  Journal
J Biol Chem 272:24530-5 (1997)
DOI:10.1074/jbc.272.39.24530
Reference
PMID:9710615
  Authors
Sato TK, Darsow T, Emr SD.
  Title
Vam7p, a SNAP-25-like molecule, and Vam3p, a syntaxin homolog, function together in yeast vacuolar protein trafficking.
  Journal
Mol Cell Biol 18:5308-19 (1998)
DOI:10.1128/MCB.18.9.5308
Reference
PMID:9813082
  Authors
Spang A, Schekman R.
  Title
Reconstitution of retrograde transport from the Golgi to the ER in vitro.
  Journal
J Cell Biol 143:589-99 (1998)
DOI:10.1083/jcb.143.3.589
Reference
  Authors
Steegmaier M, Klumperman J, Foletti DL, Yoo JS, Scheller RH.
  Title
Vesicle-associated membrane protein 4 is implicated in trans-Golgi network vesicle trafficking.
  Journal
Mol Biol Cell 10:1957-72 (1999)
DOI:10.1091/mbc.10.6.1957
Reference
  Authors
Steegmaier M, Lee KC, Prekeris R, Scheller RH.
  Title
SNARE protein trafficking in polarized MDCK cells.
  Journal
Traffic 1:553-60 (2000)
DOI:10.1034/j.1600-0854.2000.010705.x
Reference
PMID:9852078
  Authors
Steegmaier M, Yang B, Yoo JS, Huang B, Shen M, Yu S, Luo Y, Scheller RH.
  Title
Three novel proteins of the syntaxin/SNAP-25 family.
  Journal
J Biol Chem 273:34171-9 (1998)
DOI:10.1074/jbc.273.51.34171
Reference
  Authors
Subramaniam VN, Loh E, Horstmann H, Habermann A, Xu Y, Coe J, Griffiths G, Hong W.
  Title
Preferential association of syntaxin 8 with the early endosome.
  Journal
J Cell Sci 113 ( Pt 6):997-1008 (2000)
Reference
PMID:9507000
  Authors
Tang BL, Tan AE, Lim LK, Lee SS, Low DY, Hong W.
  Title
Syntaxin 12, a member of the syntaxin family localized to the endosome.
  Journal
J Biol Chem 273:6944-50 (1998)
DOI:10.1074/jbc.273.12.6944
Reference
PMID:9628864
  Authors
Ungermann C, Wickner W.
  Title
Vam7p, a vacuolar SNAP-25 homolog, is required for SNARE complex integrity and vacuole docking and fusion.
  Journal
EMBO J 17:3269-76 (1998)
DOI:10.1093/emboj/17.12.3269
Reference
  Authors
Valdez AC, Cabaniols JP, Brown MJ, Roche PA.
  Title
Syntaxin 11 is associated with SNAP-23 on late endosomes and the trans-Golgi network.
  Journal
J Cell Sci 112 ( Pt 6):845-54 (1999)
Reference
PMID:9199167
  Authors
von Mollard GF, Nothwehr SF, Stevens TH.
  Title
The yeast v-SNARE Vti1p mediates two vesicle transport pathways through interactions with the t-SNAREs Sed5p and Pep12p.
  Journal
J Cell Biol 137:1511-24 (1997)
DOI:10.1083/jcb.137.7.1511
Reference
  Authors
Wade N, Bryant NJ, Connolly LM, Simpson RJ, Luzio JP, Piper RC, James DE.
  Title
Syntaxin 7 complexes with mouse Vps10p tail interactor 1b, syntaxin 6, vesicle-associated membrane protein (VAMP)8, and VAMP7 in b16 melanoma cells.
  Journal
J Biol Chem 276:19820-7 (2001)
DOI:10.1074/jbc.M010838200
Reference
  Authors
Wendler F, Tooze S.
  Title
Syntaxin 6: the promiscuous behaviour of a SNARE protein.
  Journal
Traffic 2:606-11 (2001)
DOI:10.1034/j.1600-0854.2001.20903.x
Reference
PMID:9614193
  Authors
Wong SH, Zhang T, Xu Y, Subramaniam VN, Griffiths G, Hong W.
  Title
Endobrevin, a novel synaptobrevin/VAMP-like protein preferentially associated with the early endosome.
  Journal
Mol Biol Cell 9:1549-63 (1998)
DOI:10.1091/mbc.9.6.1549
Reference
  Authors
Xu D, Joglekar AP, Williams AL, Hay JC.
  Title
Subunit structure of a mammalian ER/Golgi SNARE complex.
  Journal
J Biol Chem 275:39631-9 (2000)
DOI:10.1074/jbc.M007684200
Reference
  Authors
Zhang T, Hong W.
  Title
Ykt6 forms a SNARE complex with syntaxin 5, GS28, and Bet1 and participates in a late stage in endoplasmic reticulum-Golgi transport.
  Journal
J Biol Chem 276:27480-7 (2001)
DOI:10.1074/jbc.M102786200
Reference
  Authors
Zheng H, Bednarek SY, Sanderfoot AA, Alonso J, Ecker JR, Raikhel NV.
  Title
NPSN11 is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE.
  Journal
Plant Physiol 129:530-9 (2002)
DOI:10.1104/pp.003970
Reference
  Authors
Zheng H, von Mollard GF, Kovaleva V, Stevens TH, Raikhel NV.
  Title
The plant vesicle-associated SNARE AtVTI1a likely mediates vesicle transport from the trans-Golgi network to the prevacuolar compartment.
  Journal
Mol Biol Cell 10:2251-64 (1999)
DOI:10.1091/mbc.10.7.2251
KO pathway
ko04130   

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