KEGG   PATHWAY: bbf03430
Entry
bbf03430                    Pathway                                
Name
Mismatch repair - Bifidobacterium bifidum BGN4
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bbf03430  Mismatch repair
bbf03430

Other DBs
GO: 0006298
Organism
Bifidobacterium bifidum BGN4 [GN:bbf]
Gene
BBB_0002  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
BBB_0254  ssb; single-stranded DNA-binding protein [KO:K03111]
BBB_0406  pcrA; ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
BBB_0429  xseB; exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
BBB_0430  xseA; exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
BBB_0448  uvrD; putative DNA helicase II-like protein [KO:K03657] [EC:5.6.2.4]
BBB_0490  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
BBB_0668  ligA; DNA ligase, NAD-dependent protein [KO:K01972] [EC:6.5.1.2]
BBB_0796  pcrA; ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
BBB_1010  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
BBB_1205  [KO:K06223] [EC:2.1.1.72]
BBB_1358  polC; DNA polymerase III polC-type [KO:K02342] [EC:2.7.7.7]
BBB_1363  ssb; single-stranded DNA-binding protein [KO:K03111]
BBB_1734  dnaX; DNA polymerase III subunit gamma/tau [KO:K02341] [EC:2.7.7.7]
BBB_1752  dnaX; DNA polymerase III, subunits gamma/tau [KO:K02343] [EC:2.7.7.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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