KEGG   PATHWAY: bkw00030
Entry
bkw00030                    Pathway                                
Name
Pentose phosphate pathway - Halalkalibacter krulwichiae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bkw00030  Pentose phosphate pathway
bkw00030

Module
bkw_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bkw00030]
bkw_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bkw00030]
bkw_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bkw00030]
bkw_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bkw00030]
bkw_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:bkw00030]
bkw_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:bkw00030]
Other DBs
GO: 0006098
Organism
Halalkalibacter krulwichiae [GN:bkw]
Gene
BkAM31D_19690  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BkAM31D_07290  pgiB; Glucose-6-phosphate isomerase B [KO:K01810] [EC:5.3.1.9]
BkAM31D_13040  zwf_2; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BkAM31D_07275  zwf_1; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BkAM31D_16310  zwf_3; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BkAM31D_19330  pgl_3; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
BkAM31D_07280  gntZ_1; 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BkAM31D_16305  gntZ_2; 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BkAM31D_12365  gndA_1; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BkAM31D_25280  gntZ_3; 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BkAM31D_14995  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BkAM31D_14230  tkt_1; Transketolase [KO:K00615] [EC:2.2.1.1]
BkAM31D_22915  tkt_3; Transketolase [KO:K00615] [EC:2.2.1.1]
BkAM31D_16095  tkt_2; Transketolase [KO:K00615] [EC:2.2.1.1]
BkAM31D_24610  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
BkAM31D_22935  ywlF_1; Putative sugar phosphate isomerase YwlF [KO:K01808] [EC:5.3.1.6]
BkAM31D_24445  ywlF_2; Putative sugar phosphate isomerase YwlF [KO:K01808] [EC:5.3.1.6]
BkAM31D_07120  hxlA_1; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
BkAM31D_16315  hxlA_2; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
BkAM31D_07115  hxlB_1; 3-hexulose-6-phosphate isomerase [KO:K08094] [EC:5.3.1.27]
BkAM31D_16320  hxlB_2; 3-hexulose-6-phosphate isomerase [KO:K08094] [EC:5.3.1.27]
BkAM31D_05295  deoC1; Deoxyribose-phosphate aldolase 1 [KO:K01619] [EC:4.1.2.4]
BkAM31D_03975  deoC2; Deoxyribose-phosphate aldolase 2 [KO:K01619] [EC:4.1.2.4]
BkAM31D_23600  rbsK; Ribokinase [KO:K00852] [EC:2.7.1.15]
BkAM31D_03960  deoB_1; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
BkAM31D_06270  deoB_2; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
BkAM31D_04265  pgcA; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
BkAM31D_00325  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BkAM31D_06595  kdgA; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BkAM31D_12855  ghrB_4; Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BkAM31D_16125  xylB_1; Xylulose kinase [KO:K25031] [EC:2.7.1.12]
BkAM31D_06570  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
BkAM31D_16090  fbaA_2; putative fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
BkAM31D_24615  fbaA_3; putative fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
BkAM31D_22920  glpX_1; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
BkAM31D_24600  glpX_2; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
BkAM31D_18680  pfkA_3; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
BkAM31D_11810  pfkA_1; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
BkAM31D_16100  pfkA_2; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bkw00010  Glycolysis / Gluconeogenesis
bkw00040  Pentose and glucuronate interconversions
bkw00052  Galactose metabolism
bkw00230  Purine metabolism
bkw00240  Pyrimidine metabolism
bkw00340  Histidine metabolism
bkw00630  Glyoxylate and dicarboxylate metabolism
bkw00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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