KEGG   PATHWAY: bpy00240
Entry
bpy00240                    Pathway                                
Name
Pyrimidine metabolism - Paraburkholderia phytofirmans PsJN
Class
Metabolism; Nucleotide metabolism
Pathway map
bpy00240  Pyrimidine metabolism
bpy00240

Module
bpy_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:bpy00240]
bpy_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bpy00240]
bpy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bpy00240]
bpy_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:bpy00240]
Other DBs
GO: 0006220 0006213
Organism
Paraburkholderia phytofirmans PsJN [GN:bpy]
Gene
Bphyt_2867  carbamoyl-phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
Bphyt_2868  carbamoyl-phosphate synthase, small subunit [KO:K01956] [EC:6.3.5.5]
Bphyt_0871  aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
Bphyt_5900  aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
Bphyt_0874  dihydroorotase, multifunctional complex type [KO:K01465] [EC:3.5.2.3]
Bphyt_3357  dihydroorotase, homodimeric type [KO:K01465] [EC:3.5.2.3]
Bphyt_1730  Dihydroorotate oxidase [KO:K00254] [EC:1.3.5.2]
Bphyt_3676  Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
Bphyt_3404  orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
Bphyt_2453  uridylate kinase [KO:K09903] [EC:2.7.4.22]
Bphyt_2544  Nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Bphyt_1295  maf protein [KO:K06287] [EC:3.6.1.-]
Bphyt_2641  protein of unknown function DUF45 [KO:K07043] [EC:3.6.1.-]
Bphyt_2562  CTP synthase [KO:K01937] [EC:6.3.4.2]
Bphyt_3002  cytidylate kinase [KO:K00945] [EC:2.7.4.25]
Bphyt_0644  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
Bphyt_1834  stationary-phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Bphyt_5346  stationary-phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Bphyt_6718  protein of unknown function DUF1255 [KO:K09913] [EC:2.4.2.1 2.4.2.2]
Bphyt_1302  uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
Bphyt_0870  phosphoribosyltransferase [KO:K02825] [EC:2.4.2.9]
Bphyt_6279  Indigoidine synthase A family protein [KO:K16329] [EC:4.2.1.70]
Bphyt_4421  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
Bphyt_2598  Amidohydrolase 3 [KO:K01485] [EC:3.5.4.1 3.5.4.21]
Bphyt_1019  deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
Bphyt_4943  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [KO:K00525] [EC:1.17.4.1]
Bphyt_3436  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
Bphyt_3435  Ribonucleoside-diphosphate reductase [KO:K00526] [EC:1.17.4.1]
Bphyt_1939  dTMP kinase [KO:K00943] [EC:2.7.4.9]
Bphyt_3163  deoxyuridine 5'-triphosphate nucleotidohydrolase Dut [KO:K01520] [EC:3.6.1.23]
Bphyt_2954  Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
Bphyt_2690  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K17722] [EC:1.3.1.1]
Bphyt_2689  dihydroorotate dehydrogenase family protein [KO:K17723] [EC:1.3.1.1]
Bphyt_2687  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
Bphyt_4250  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
Bphyt_0043  amidase, hydantoinase/carbamoylase family [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Bphyt_2691  amidase, hydantoinase/carbamoylase family [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Bphyt_4258  amidase, hydantoinase/carbamoylase family [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Bphyt_4127  amidase, hydantoinase/carbamoylase family [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Bphyt_6569  amidase, hydantoinase/carbamoylase family [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Bphyt_5028  flavin reductase domain protein FMN-binding [KO:K09024] [EC:1.5.1.-]
Bphyt_0764  short-chain dehydrogenase/reductase SDR [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Bphyt_4806  nitroreductase [KO:K09019] [EC:1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
bpy00030  Pentose phosphate pathway
bpy00220  Arginine biosynthesis
bpy00250  Alanine, aspartate and glutamate metabolism
bpy00280  Valine, leucine and isoleucine degradation
bpy00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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