KEGG   PATHWAY: bsau00020
Entry
bsau00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brachybacterium saurashtrense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsau00020  Citrate cycle (TCA cycle)
bsau00020

Module
bsau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsau00020]
bsau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsau00020]
bsau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsau00020]
bsau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsau00020]
Other DBs
GO: 0006099
Organism
Brachybacterium saurashtrense [GN:bsau]
Gene
DWV08_02850  citrate synthase [KO:K01647] [EC:2.3.3.1]
DWV08_00250  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DWV08_04755  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DWV08_08450  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DWV08_07150  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
DWV08_05705  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DWV08_01810  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DWV08_01805  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DWV08_08105  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DWV08_08110  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DWV08_08095  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DWV08_08100  succinate dehydrogenase [KO:K00242]
DWV08_08985  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DWV08_03740  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
DWV08_05830  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DWV08_05710  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsau00010  Glycolysis / Gluconeogenesis
bsau00053  Ascorbate and aldarate metabolism
bsau00061  Fatty acid biosynthesis
bsau00071  Fatty acid degradation
bsau00190  Oxidative phosphorylation
bsau00220  Arginine biosynthesis
bsau00250  Alanine, aspartate and glutamate metabolism
bsau00280  Valine, leucine and isoleucine degradation
bsau00350  Tyrosine metabolism
bsau00470  D-Amino acid metabolism
bsau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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