KEGG   PATHWAY: bspo00020
Entry
bspo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brevibacterium spongiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bspo00020  Citrate cycle (TCA cycle)
bspo00020

Module
bspo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bspo00020]
bspo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bspo00020]
bspo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bspo00020]
bspo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bspo00020]
bspo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bspo00020]
Other DBs
GO: 0006099
Organism
Brevibacterium spongiae [GN:bspo]
Gene
L1F31_05460  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
L1F31_08010  citrate synthase [KO:K01647] [EC:2.3.3.1]
L1F31_03930  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
L1F31_10690  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
L1F31_07930  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L1F31_08235  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
L1F31_09160  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L1F31_13050  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L1F31_13055  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L1F31_06870  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
L1F31_02680  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
L1F31_13115  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L1F31_13120  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L1F31_13105  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
L1F31_13110  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
L1F31_01530  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01676] [EC:4.2.1.2]
L1F31_07405  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
L1F31_04590  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
L1F31_06620  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
L1F31_09295  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
L1F31_16135  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
L1F31_00500  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
L1F31_04565  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
L1F31_08980  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
L1F31_09155  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bspo00010  Glycolysis / Gluconeogenesis
bspo00053  Ascorbate and aldarate metabolism
bspo00061  Fatty acid biosynthesis
bspo00071  Fatty acid degradation
bspo00190  Oxidative phosphorylation
bspo00220  Arginine biosynthesis
bspo00250  Alanine, aspartate and glutamate metabolism
bspo00280  Valine, leucine and isoleucine degradation
bspo00350  Tyrosine metabolism
bspo00470  D-Amino acid metabolism
bspo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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