KEGG   PATHWAY: care00030
Entry
care00030                   Pathway                                
Name
Pentose phosphate pathway - Collimonas arenae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
care00030  Pentose phosphate pathway
care00030

Module
care_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:care00030]
care_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:care00030]
care_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:care00030]
care_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:care00030]
care_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:care00030]
Other DBs
GO: 0006098
Organism
Collimonas arenae [GN:care]
Gene
LT85_3314  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
LT85_3315  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
LT85_3323  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
LT85_0232  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
LT85_1063  Putative hemagglutinin-related protein [KO:K07404] [EC:3.1.1.31]
LT85_3004  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
LT85_0774  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
LT85_1246  Transketolase [KO:K00615] [EC:2.2.1.1]
LT85_1631  Transaldolase [KO:K00616] [EC:2.2.1.2]
LT85_3328  Transaldolase [KO:K00616] [EC:2.2.1.2]
LT85_3465  Ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
LT85_4663  Ribokinase [KO:K00852] [EC:2.7.1.15]
LT85_3003  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
LT85_2932  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
LT85_0901  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
LT85_0672  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
LT85_3313  Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
LT85_3312  4-Hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LT85_4991  2-Keto-D-gluconate dehydrogenase [KO:K19813] [EC:1.1.5.9]
LT85_0234  2-Keto-D-gluconate dehydrogenase [KO:K19813] [EC:1.1.5.9]
LT85_1512  Glyoxylate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
LT85_4982  Gluconokinase [KO:K25031] [EC:2.7.1.12]
LT85_3494  2-dehydro-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
LT85_3979  D-glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
LT85_2037  Fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
LT85_4331  Fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
LT85_1203  Fructose-1,6-bisphosphatase, type I [KO:K03841] [EC:3.1.3.11]
LT85_2038  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
care00010  Glycolysis / Gluconeogenesis
care00040  Pentose and glucuronate interconversions
care00052  Galactose metabolism
care00230  Purine metabolism
care00240  Pyrimidine metabolism
care00340  Histidine metabolism
care00630  Glyoxylate and dicarboxylate metabolism
care00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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