KEGG   PATHWAY: cery03030
Entry
cery03030                   Pathway                                
Name
DNA replication - Chanodichthys erythropterus (predatory carp)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
cery03030  DNA replication
cery03030

Organism
Chanodichthys erythropterus (predatory carp) [GN:cery]
Gene
137002020  rpa3; replication protein A 14 kDa subunit [KO:K10740]
137002742  mcm6l; MCM6 minichromosome maintenance deficient 6, like [KO:K02542] [EC:5.6.2.3]
137002814  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
137003055  zgc:110269; probable flap endonuclease 1 homolog [KO:K04799] [EC:3.1.-.-]
137004143  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
137006574  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
137009410  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
137010903  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
137012491  pold3; DNA polymerase delta subunit 3 [KO:K03504]
137012856  rfc2; replication factor C subunit 2 [KO:K10755]
137013600  pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
137013658  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
137014138  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
137014261  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
137017352  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
137017474  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
137018432  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
137019084  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
137019133  mcm7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
137019405  mcm3l; MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like [KO:K02541] [EC:5.6.2.3]
137020037  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
137020049  prim2; DNA primase large subunit [KO:K02685]
137020927  rfc4; replication factor C subunit 4 [KO:K10755]
137021199  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
137024226  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
137026950  pola2; DNA polymerase alpha subunit B [KO:K02321]
137027259  pold2; DNA polymerase delta subunit 2 [KO:K02328]
137029277  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
137029482  pcna; proliferating cell nuclear antigen [KO:K04802]
137029590  rfc3; replication factor C subunit 3 [KO:K10756]
137030027  rpa2; replication protein A 32 kDa subunit [KO:K10739]
137031619  pold4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
137031837  rfc1; replication factor C subunit 1 [KO:K10754]
137032565  rnaseh2a; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
137033743  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
137034615  pole; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
137034707  rfc5; replication factor C subunit 5 [KO:K10756]
137036000  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system