KEGG   PATHWAY: cfj00020
Entry
cfj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Colletotrichum fioriniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfj00020  Citrate cycle (TCA cycle)
cfj00020

Module
cfj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfj00020]
cfj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfj00020]
cfj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfj00020]
cfj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfj00020]
Other DBs
GO: 0006099
Organism
Colletotrichum fioriniae [GN:cfj]
Gene
CFIO01_05380  citrate synthase [KO:K01647] [EC:2.3.3.1]
CFIO01_09375  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CFIO01_13523  citrate synthase [KO:K01647] [EC:2.3.3.1]
CFIO01_01168  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CFIO01_10475  hypothetical protein [KO:K01648] [EC:2.3.3.8]
CFIO01_10476  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
CFIO01_12758  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CFIO01_04591  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CFIO01_12107  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CFIO01_00443  isocitrate dehydrogenase subunit 2 [KO:K00030] [EC:1.1.1.41]
CFIO01_00912  isocitrate dehydrogenase subunit 1 [KO:K00030] [EC:1.1.1.41]
CFIO01_12493  oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
CFIO01_04887  oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
CFIO01_04886  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CFIO01_01385  2-oxoacid dehydrogenase acyltransferase [KO:K00658] [EC:2.3.1.61]
CFIO01_08096  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFIO01_04019  succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CFIO01_01932  succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CFIO01_02413  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CFIO01_08249  succinate-CoA ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CFIO01_08611  succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
CFIO01_08610  succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
CFIO01_06484  succinate dehydrogenase cytochrome b subunit [KO:K00236]
CFIO01_08358  CybS protein [KO:K00237]
CFIO01_07533  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CFIO01_12346  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CFIO01_01713  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CFIO01_13106  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CFIO01_07433  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CFIO01_03481  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CFIO01_08531  pyruvate dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
CFIO01_05952  dihydrolipoyllysine-residue acetyltransferase component- pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfj00010  Glycolysis / Gluconeogenesis
cfj00053  Ascorbate and aldarate metabolism
cfj00061  Fatty acid biosynthesis
cfj00062  Fatty acid elongation
cfj00071  Fatty acid degradation
cfj00190  Oxidative phosphorylation
cfj00220  Arginine biosynthesis
cfj00250  Alanine, aspartate and glutamate metabolism
cfj00280  Valine, leucine and isoleucine degradation
cfj00350  Tyrosine metabolism
cfj00470  D-Amino acid metabolism
cfj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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