KEGG   PATHWAY: cgi00020
Entry
cgi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cryptococcus gattii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cgi00020  Citrate cycle (TCA cycle)
cgi00020

Module
cgi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cgi00020]
cgi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cgi00020]
cgi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cgi00020]
cgi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cgi00020]
cgi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cgi00020]
Other DBs
GO: 0006099
Organism
Cryptococcus gattii [GN:cgi]
Gene
CGB_B0530W  citrate synthase [KO:K01647] [EC:2.3.3.1]
CGB_D8790W  ATP-citrate synthase subunit 1 (ATP-citrate (pro-S-)-lyase 1) [KO:K01648] [EC:2.3.3.8]
CGB_D5170C  aconitase [KO:K01681] [EC:4.2.1.3]
CGB_G4520C  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CGB_A2040C  isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
CGB_A4730W  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CGB_I2710W  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
CGB_B5780W  oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
CGB_B6710W  2-oxoglutarate metabolism-related protein [KO:K00658] [EC:2.3.1.61]
CGB_I0650W  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGB_G4001W  succinyl-coa ligase alpha-chain, mitochondrial precursor [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CGB_A8350W  succinate-CoA ligase (ADP-forming) [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CGB_H4700C  succinate dehydrogenase flavoprotein subunit precursor [KO:K00234] [EC:1.3.5.1]
CGB_G1600C  succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
CGB_B4140C  hypothetical protein [KO:K00236]
CGB_B8170W  mitochondrial inner membrane protein [KO:K00237]
CGB_C2510W  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CGB_G2280C  L-malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CGB_G1590C  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CGB_F5620C  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CGB_H4450C  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CGB_F0390C  pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor [KO:K00161] [EC:1.2.4.1]
CGB_D1420W  pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor [KO:K00162] [EC:1.2.4.1]
CGB_D4870W  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cgi00010  Glycolysis / Gluconeogenesis
cgi00053  Ascorbate and aldarate metabolism
cgi00061  Fatty acid biosynthesis
cgi00062  Fatty acid elongation
cgi00071  Fatty acid degradation
cgi00190  Oxidative phosphorylation
cgi00220  Arginine biosynthesis
cgi00250  Alanine, aspartate and glutamate metabolism
cgi00280  Valine, leucine and isoleucine degradation
cgi00350  Tyrosine metabolism
cgi00470  D-Amino acid metabolism
cgi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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