KEGG   PATHWAY: cgib00534
Entry
cgib00534                   Pathway                                
Name
Glycosaminoglycan biosynthesis - heparan sulfate / heparin - Carassius gibelio (silver crucian carp)
Description
Heparan sulfate (HS) and heparin (Hep) are glycosaminoglycans with repeating disaccharide units that consist of alternating residues of alpha-D-glucosamine (GlcN) and uronic acid, the latter being either beta-D-glucuronic acid (GlcA) or alpha-L-iduronic acid (IdoA). In these sugar residues, sulfation modification may be performed at various positions. Structural studies show that Hep possesses a higher degree of sulfation than HS. The biosynthesis of HS/Hep occurs with the addition of the first GlcNAc residue by EXTL3 glycosyltransferase after completion of tetrasaccharide linkage region attached to serine residue of a core protein. The chain polymeraization is then catalyzed by EXT1 and EXT2 transferases. As the chain polymerizes, HS/Hep undergoes a series of modification reactions including N-deacetylation, N-sulfation, epimerization, and subsequently O-sulfation. As final products of biosynthesis, HS is present in the form of hepran sulfate proteoglycan (HSPG) whereas Hep exists as a sugar chain without a core protein. The proteoglycan families with HS, as well as CS (chondroitin sulfate), DS (dermatan sulfate), and KS (keratan sulfate), are composed of two main types depending on the subcellular locations: cell membrane and extracellular matrix [BR:00535]. HS/Hep has been shown to bind to a variety of molecules, such as growth factors, chemokines, morphogens, and extracellular matrix components [BR:00536].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
cgib00534  Glycosaminoglycan biosynthesis - heparan sulfate / heparin
cgib00534

Module
cgib_M00057  Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH:cgib00534]
cgib_M00059  Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:cgib00534]
Other DBs
GO: 0030210
Organism
Carassius gibelio (silver crucian carp) [GN:cgib]
Gene
127953126  xylosyltransferase 2 isoform X1 [KO:K00771] [EC:2.4.2.26]
127953607  xylosyltransferase 1-like [KO:K00771] [EC:2.4.2.26]
127944938  xylosyltransferase 2-like isoform X1 [KO:K00771] [EC:2.4.2.26]
127948528  xylosyltransferase 1 [KO:K00771] [EC:2.4.2.26]
127971991  beta-1,4-galactosyltransferase 7-like [KO:K00733] [EC:2.4.1.133]
128027327  beta-1,4-galactosyltransferase 7-like [KO:K00733] [EC:2.4.1.133]
127968611  beta-1,3-galactosyltransferase 6 [KO:K00734] [EC:2.4.1.134]
128022598  beta-1,3-galactosyltransferase 6-like [KO:K00734] [EC:2.4.1.134]
127961154  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3-like [KO:K10158] [EC:2.4.1.135]
128017105  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3-like isoform X1 [KO:K10158] [EC:2.4.1.135]
127950924  exostosin-like 2 [KO:K02369] [EC:2.4.1.223]
127984120  exostosin-like 3 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
127938533  exostosin-like 3 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
127979490  exostosin-1b-like [KO:K02366] [EC:2.4.1.224 2.4.1.225]
127983603  exostosin-1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
127975010  exostosin-1a [KO:K02366] [EC:2.4.1.224 2.4.1.225]
127935072  exostosin-1b [KO:K02366] [EC:2.4.1.224 2.4.1.225]
127935393  exostosin-1c isoform X1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
127938411  exostosin-1-like [KO:K02366] [EC:2.4.1.224 2.4.1.225]
127978542  exostosin-1c-like [KO:K02366] [EC:2.4.1.224 2.4.1.225]
128030806  exostosin-1a-like [KO:K02366] [EC:2.4.1.224 2.4.1.225]
127962006  exostosin-2-like [KO:K02367] [EC:2.4.1.224 2.4.1.225]
128017046  exostosin-2 [KO:K02367] [EC:2.4.1.224 2.4.1.225]
127970892  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X1 [KO:K02576] [EC:3.5.1.- 2.8.2.8]
127985474  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1b [KO:K02576] [EC:3.5.1.- 2.8.2.8]
127968923  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 [KO:K02577] [EC:3.5.1.- 2.8.2.8]
127970087  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [KO:K02577] [EC:3.5.1.- 2.8.2.8]
128025446  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [KO:K02577] [EC:3.5.1.- 2.8.2.8]
128026271  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [KO:K02577] [EC:3.5.1.- 2.8.2.8]
127949300  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [KO:K02579] [EC:3.5.1.- 2.8.2.8]
127961048  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like [KO:K02579] [EC:3.5.1.- 2.8.2.8]
127962113  D-glucuronyl C5-epimerase B [KO:K01793] [EC:5.1.3.17]
128014596  glucuronic acid epimerase a [KO:K01793] [EC:5.1.3.17]
128016907  D-glucuronyl C5-epimerase B-like [KO:K01793] [EC:5.1.3.17]
127951530  heparan sulfate 2-O-sulfotransferase 1-like [KO:K02513] [EC:2.8.2.-]
127960026  heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
128015541  heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
128027707  heparan sulfate 2-O-sulfotransferase 1-like [KO:K02513] [EC:2.8.2.-]
127934028  heparan-sulfate 6-O-sulfotransferase 1-A-like [KO:K02514] [EC:2.8.2.-]
127946351  heparan-sulfate 6-O-sulfotransferase 1-B-like [KO:K02514] [EC:2.8.2.-]
127950731  heparan-sulfate 6-O-sulfotransferase 1-A [KO:K02514] [EC:2.8.2.-]
128013232  heparan-sulfate 6-O-sulfotransferase 1-B [KO:K02514] [EC:2.8.2.-]
127971869  heparan-sulfate 6-O-sulfotransferase 2-like isoform X1 [KO:K08102] [EC:2.8.2.-]
128027266  heparan-sulfate 6-O-sulfotransferase 2 isoform X1 [KO:K08102] [EC:2.8.2.-]
127964576  heparan-sulfate 6-O-sulfotransferase 3-B [KO:K08103] [EC:2.8.2.-]
127959660  heparan-sulfate 6-O-sulfotransferase 3-B-like [KO:K08103] [EC:2.8.2.-]
128019858  heparan-sulfate 6-O-sulfotransferase 3-B-like [KO:K08103] [EC:2.8.2.-]
127971441  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
127957161  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
127969954  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
128026642  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
128027451  heparan sulfate glucosamine 3-O-sulfotransferase 1 [KO:K01024] [EC:2.8.2.23]
128012177  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
127952350  heparan sulfate glucosamine 3-O-sulfotransferase 2-like [KO:K07808] [EC:2.8.2.29]
127953253  heparan sulfate glucosamine 3-O-sulfotransferase 2-like [KO:K07808] [EC:2.8.2.29]
127951762  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [KO:K07809] [EC:2.8.2.30]
127953299  heparan sulfate glucosamine 3-O-sulfotransferase 3B1a isoform X1 [KO:K07809] [EC:2.8.2.30]
127968793  heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [KO:K07809] [EC:2.8.2.30]
127968864  si:ch211-216b21.2; heparan sulfate glucosamine 3-O-sulfotransferase 3A1 [KO:K07809] [EC:2.8.2.30]
127969201  heparan sulfate glucosamine 3-O-sulfotransferase 3B1b [KO:K07809] [EC:2.8.2.30]
128025464  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [KO:K07809] [EC:2.8.2.30]
128025465  heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like [KO:K07809] [EC:2.8.2.30]
127933992  heparan sulfate glucosamine 3-O-sulfotransferase 5-like [KO:K08104] [EC:2.8.2.23]
127984505  heparan sulfate glucosamine 3-O-sulfotransferase 5-like [KO:K08104] [EC:2.8.2.23]
Compound
C00033  Acetate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C02189  [Protein]-L-serine
G00154   
G00155   
G00156   
G00157   
G00162   
G00163   
G00164   
Reference
  Authors
Kim BT, Kitagawa H, Tamura J, Saito T, Kusche-Gullberg M, Lindahl U, Sugahara K
  Title
Human tumor suppressor EXT gene family members EXTL1 and EXTL3 encode alpha 1,4- N-acetylglucosaminyltransferases that likely are involved in heparan sulfate/ heparin biosynthesis.
  Journal
Proc Natl Acad Sci U S A 98:7176-81 (2001)
DOI:10.1073/pnas.131188498
Reference
  Authors
Kitagawa H, Shimakawa H, Sugahara K
  Title
The tumor suppressor EXT-like gene EXTL2 encodes an alpha1, 4-N-acetylhexosaminyltransferase that transfers N-acetylgalactosamine and N-acetylglucosamine to the common glycosaminoglycan-protein linkage region. The key enzyme for the chain initiation of heparan sulfate.
  Journal
J Biol Chem 274:13933-7 (1999)
DOI:10.1074/jbc.274.20.13933
Reference
PMID:9756849
  Authors
Lind T, Tufaro F, McCormick C, Lindahl U, Lidholt K
  Title
The putative tumor suppressors EXT1 and EXT2 are glycosyltransferases required for the biosynthesis of heparan sulfate.
  Journal
J Biol Chem 273:26265-8 (1998)
DOI:10.1074/jbc.273.41.26265
Reference
  Authors
Li JP, Gong F, El Darwish K, Jalkanen M, Lindahl U.
  Title
Characterization of the D-glucuronyl C5-epimerase involved in the biosynthesis of heparin and heparan sulfate.
  Journal
J Biol Chem 276:20069-77 (2001)
DOI:10.1074/jbc.M011783200
Reference
  Authors
Habuchi O
  Title
Diversity and functions of glycosaminoglycan sulfotransferases.
  Journal
Biochim Biophys Acta 1474:115-27 (2000)
DOI:10.1016/S0304-4165(00)00016-7
Reference
PMID:9151776
  Authors
Rosenberg RD, Shworak NW, Liu J, Schwartz JJ, Zhang L
  Title
Heparan sulfate proteoglycans of the cardiovascular system. Specific structures emerge but how is synthesis regulated?
  Journal
J Clin Invest 99:2062-70 (1997)
DOI:10.1172/JCI119377
Reference
PMID:9988768
  Authors
Liu J, Shworak NW, Sinay P, Schwartz JJ, Zhang L, Fritze LM, Rosenberg RD
  Title
Expression of heparan sulfate D-glucosaminyl 3-O-sulfotransferase isoforms reveals novel substrate specificities.
  Journal
J Biol Chem 274:5185-92 (1999)
DOI:10.1074/jbc.274.8.5185
Reference
  Authors
Shukla D, Liu J, Blaiklock P, Shworak NW, Bai X, Esko JD, Cohen GH, Eisenberg RJ, Rosenberg RD, Spear PG
  Title
A novel role for 3-O-sulfated heparan sulfate in herpes simplex virus 1 entry.
  Journal
Cell 99:13-22 (1999)
DOI:10.1016/S0092-8674(00)80058-6
Reference
  Authors
Moon AF, Edavettal SC, Krahn JM, Munoz EM, Negishi M, Linhardt RJ, Liu J, Pedersen LC
  Title
Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1.
  Journal
J Biol Chem 279:45185-93 (2004)
DOI:10.1074/jbc.M405013200
Reference
  Authors
Chen J, Liu J
  Title
Characterization of the structure of antithrombin-binding heparan sulfate generated by heparan sulfate 3-O-sulfotransferase 5.
  Journal
Biochim Biophys Acta 1725:190-200 (2005)
DOI:10.1016/j.bbagen.2005.06.012
Related
pathway
cgib00531  Glycosaminoglycan degradation
KO pathway
ko00534   
LinkDB

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