KEGG   PATHWAY: cst00020
Entry
cst00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acetoanaerobium sticklandii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cst00020  Citrate cycle (TCA cycle)
cst00020

Module
cst_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cst00020]
cst_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cst00020]
cst_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cst00020]
Other DBs
GO: 0006099
Organism
Acetoanaerobium sticklandii [GN:cst]
Gene
CLOST_1244  methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CLOST_2277  ybhJ; putative enzyme [KO:K01681] [EC:4.2.1.3]
CLOST_1243  icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage [KO:K00030] [EC:1.1.1.41]
CLOST_1166  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLOST_0380  putative FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
CLOST_1157  vorB; Ketoisovalerate oxidoreductase subunit vorB (VOR) (2-oxoisovalerate oxidoreductase beta chain) (2-oxoisovalerate ferredoxin reductase subunit beta) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLOST_1473  korA; 2-oxoglutarate synthase subunit korA (2-ketoglutarate oxidoreductase alpha chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase subunit alpha) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLOST_0491  vorB; Ketoisovalerate oxidoreductase subunit vorB (VOR) (2-oxoisovalerate oxidoreductase beta chain) (2-oxoisovalerate ferredoxin reductase subunit beta) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLOST_1158  Thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLOST_1472  korB; 2-oxoglutarate synthase subunit korB (2-ketoglutarate oxidoreductase beta chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase subunit beta) [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLOST_0492  putative subunit of oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLOST_1159  Pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
CLOST_1471  korC; 2-oxoglutarate synthase subunit korC (2-ketoglutarate oxidoreductase gamma chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase subunit gamma) [KO:K00177] [EC:1.2.7.3]
CLOST_0493  putative subunit of oxidoreductase [KO:K00177] [EC:1.2.7.3]
CLOST_1156  4Fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
CLOST_1474  Ferredoxin [KO:K00176] [EC:1.2.7.3]
CLOST_0490  4Fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
CLOST_1068  putative fumarate hydratase subunit alpha (Fumarase) [KO:K01677] [EC:4.2.1.2]
CLOST_1067  putative fumarate hydratase subunit beta (Fumarase) [KO:K01678] [EC:4.2.1.2]
CLOST_0021  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CLOST_0876  conserved protein of unknown function [KO:K01610] [EC:4.1.1.49]
CLOST_0753  porC; Pyruvate synthase subunit porC (Pyruvate oxidoreductase gamma chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit gamma) [KO:K00172] [EC:1.2.7.1]
CLOST_0754  Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit (modular protein) [KO:K00171] [EC:1.2.7.1]
CLOST_1913  conserved protein of unknown function [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cst00010  Glycolysis / Gluconeogenesis
cst00061  Fatty acid biosynthesis
cst00071  Fatty acid degradation
cst00190  Oxidative phosphorylation
cst00220  Arginine biosynthesis
cst00250  Alanine, aspartate and glutamate metabolism
cst00280  Valine, leucine and isoleucine degradation
cst00350  Tyrosine metabolism
cst00470  D-Amino acid metabolism
cst00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system