KEGG   PATHWAY: daq00240
Entry
daq00240                    Pathway                                
Name
Pyrimidine metabolism - Dickeya aquatica
Class
Metabolism; Nucleotide metabolism
Pathway map
daq00240  Pyrimidine metabolism
daq00240

Module
daq_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:daq00240]
daq_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:daq00240]
daq_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:daq00240]
daq_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:daq00240]
daq_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:daq00240]
Other DBs
GO: 0006220 0006213
Organism
Dickeya aquatica [GN:daq]
Gene
DAQ1742_03869  carB; Carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
DAQ1742_03870  carA; Carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5]
DAQ1742_00483  pyrB; Aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
DAQ1742_00482  pyrI; Aspartate carbamoyltransferase regulatory chain (PyrI) [KO:K00610]
DAQ1742_02852  pyrC; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
DAQ1742_02776  pyrD; Dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
DAQ1742_00211  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
DAQ1742_02708  pyrF; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
DAQ1742_03323  pyrH; Uridine monophosphate kinase [KO:K09903] [EC:2.7.4.22]
DAQ1742_01104  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
DAQ1742_03550  mazG; Nucleoside triphosphate pyrophosphohydrolase MazG [KO:K04765] [EC:3.6.1.9]
DAQ1742_00358  yhdE; homologous to the B. subtilus Maf protein, a polar-localized, cell division-associated protein that inhibits septum formation when overproduced [KO:K06287] [EC:3.6.1.-]
DAQ1742_03549  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
DAQ1742_02083  cmk; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
DAQ1742_02934  udk; Uridine kinase [C1] [KO:K00876] [EC:2.7.1.48]
DAQ1742_03125  ushA; UDP-sugar hydrolase; 5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
DAQ1742_00245  udp; Uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
DAQ1742_03263  yaiE; Cytoplasmic protein YaiE [KO:K09913] [EC:2.4.2.1 2.4.2.2]
DAQ1742_03078  upp; Uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
DAQ1742_03595  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
DAQ1742_04345  indA; Indigoidine biosynthesis protein [KO:K16329] [EC:4.2.1.70]
DAQ1742_03873  rihC; Inosine-uridine preferring nucleoside hydrolase [KO:K12700] [EC:3.2.2.-]
DAQ1742_03335  yqdH; Decarboxylase family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
DAQ1742_01606  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
DAQ1742_03617  codA; Cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
DAQ1742_00463  nrdD; Ribonucleotide reductase of class III (anaerobic), large subunit [KO:K21636] [EC:1.1.98.6]
DAQ1742_02933  dcd; Deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
DAQ1742_03114  nrdA; Ribonucleotide reductase of class Ia (aerobic), alpha subunit [KO:K00525] [EC:1.17.4.1]
DAQ1742_03115  nrdB; Ribonucleotide reductase of class Ia (aerobic), beta subunit [KO:K00526] [EC:1.17.4.1]
DAQ1742_01349  yfbR; Nucleotidase YfbR, HD superfamily [KO:K08722] [EC:3.1.3.89]
DAQ1742_02836  tmk; Thymidylate kinase [KO:K00943] [EC:2.7.4.9]
DAQ1742_00213  dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
DAQ1742_00717  deoA; Thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
DAQ1742_02256  tdk; Thymidine kinase [KO:K00857] [EC:2.7.1.21]
DAQ1742_03358  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
DAQ1742_04385  Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism [KO:K17722] [EC:1.3.1.1]
DAQ1742_04384  pydA; Dihydropyrimidine dehydrogenase [NADP+] [KO:K17723] [EC:1.3.1.1]
DAQ1742_04383  dht; Dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
DAQ1742_04382  Beta-ureidopropionase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
DAQ1742_02184  ydfG; NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
daq00030  Pentose phosphate pathway
daq00220  Arginine biosynthesis
daq00250  Alanine, aspartate and glutamate metabolism
daq00280  Valine, leucine and isoleucine degradation
daq00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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