KEGG   PATHWAY: drt00010
Entry
drt00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Desulfohalobium retbaense
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
drt00010  Glycolysis / Gluconeogenesis
drt00010

Module
drt_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:drt00010]
drt_M00002  Glycolysis, core module involving three-carbon compounds [PATH:drt00010]
drt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:drt00010]
Other DBs
GO: 0006096 0006094
Organism
Desulfohalobium retbaense [GN:drt]
Gene
Dret_0813  ROK family protein [KO:K25026] [EC:2.7.1.2]
Dret_2494  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Dret_2114  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Dret_1910  Inositol phosphatase/fructose-16-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Dret_0850  fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
Dret_2454  Fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
Dret_1398  fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
Dret_2309  ketose-bisphosphate aldolase class-II [KO:K01624] [EC:4.1.2.13]
Dret_0114  predicted phospho-2-dehydro-3-deoxyheptonate aldolase [KO:K16306] [EC:4.1.2.13 2.2.1.10]
Dret_1549  triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
Dret_0340  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
Dret_1397  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
Dret_1551  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
Dret_0773  phosphoglycerate mutase 1 family [KO:K01834] [EC:5.4.2.11]
Dret_1141  phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [KO:K15633] [EC:5.4.2.12]
Dret_1930  phosphonopyruvate decarboxylase-related protein [KO:K15635] [EC:5.4.2.12]
Dret_0451  enolase [KO:K01689] [EC:4.2.1.11]
Dret_2252  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Dret_0691  pyruvate phosphate dikinase PEP/pyruvate-binding protein [KO:K01007] [EC:2.7.9.2]
Dret_0098  pyruvate phosphate dikinase PEP/pyruvate-binding protein [KO:K01007] [EC:2.7.9.2]
Dret_1580  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Dret_1036  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Dret_0091  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Dret_1402  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Dret_0515  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Dret_0090  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Dret_1401  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Dret_0516  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Dret_0199  iron-containing alcohol dehydrogenase [KO:K13954] [EC:1.1.1.1]
Dret_0202  iron-containing alcohol dehydrogenase [KO:K00001] [EC:1.1.1.1]
Dret_0818  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Dret_2132  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Dret_2481  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Dret_1330  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
Dret_0485  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
drt00020  Citrate cycle (TCA cycle)
drt00030  Pentose phosphate pathway
drt00500  Starch and sucrose metabolism
drt00620  Pyruvate metabolism
drt00640  Propanoate metabolism
drt00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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