KEGG   PATHWAY: dvm00010
Entry
dvm00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Nitratidesulfovibrio vulgaris Miyazaki F
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dvm00010  Glycolysis / Gluconeogenesis
dvm00010

Module
dvm_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:dvm00010]
dvm_M00002  Glycolysis, core module involving three-carbon compounds [PATH:dvm00010]
dvm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dvm00010]
Other DBs
GO: 0006096 0006094
Organism
Nitratidesulfovibrio vulgaris Miyazaki F [GN:dvm]
Gene
DvMF_0900  Glucokinase [KO:K00845] [EC:2.7.1.2]
DvMF_2202  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
DvMF_0763  Diphosphate--fructose-6-phosphate 1-phosphotransferase [KO:K00850] [EC:2.7.1.11]
DvMF_0404  Inositol phosphatase/fructose-16-bisphosphatase [KO:K03841] [EC:3.1.3.11]
DvMF_0188  fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
DvMF_0013  fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
DvMF_1751  predicted phospho-2-dehydro-3-deoxyheptonate aldolase [KO:K16306] [EC:4.1.2.13 2.2.1.10]
DvMF_0348  Triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
DvMF_0012  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
DvMF_1440  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
DvMF_0975  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
DvMF_1462  phosphoglycerate mutase 1 family [KO:K01834] [EC:5.4.2.11]
DvMF_0439  phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [KO:K15633] [EC:5.4.2.12]
DvMF_1414  Phosphoglycerate mutase [KO:K15635] [EC:5.4.2.12]
DvMF_1810  Phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
DvMF_0965  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
DvMF_0416  pyruvate phosphate dikinase PEP/pyruvate-binding [KO:K01007] [EC:2.7.9.2]
DvMF_1987  Pyruvate, water dikinase [KO:K01007] [EC:2.7.9.2]
DvMF_1990  Pyruvate, water dikinase [KO:K01007] [EC:2.7.9.2]
DvMF_2339  Pyruvate, water dikinase [KO:K01007] [EC:2.7.9.2]
DvMF_2187  pyruvate phosphate dikinase PEP/pyruvate-binding [KO:K01007] [EC:2.7.9.2]
DvMF_0705  Pyruvate, water dikinase [KO:K01007] [EC:2.7.9.2]
DvMF_0707  PEP-utilising protein mobile region [KO:K01007] [EC:2.7.9.2]
DvMF_0708  Pyruvate, water dikinase [KO:K01007] [EC:2.7.9.2]
DvMF_0222  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
DvMF_1860  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DvMF_0603  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DvMF_2055  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DvMF_0184  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DvMF_0604  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DvMF_0185  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DvMF_2056  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DvMF_2322  iron-containing alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
DvMF_0321  iron-containing alcohol dehydrogenase [KO:K13954] [EC:1.1.1.1]
DvMF_1315  iron-containing alcohol dehydrogenase [KO:K00001] [EC:1.1.1.1]
DvMF_1433  iron-containing alcohol dehydrogenase [KO:K00001] [EC:1.1.1.1]
DvMF_0330  iron-containing alcohol dehydrogenase [KO:K00001] [EC:1.1.1.1]
DvMF_2633  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
DvMF_1775  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
DvMF_0003  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
DvMF_2783  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
DvMF_0227  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
DvMF_2673  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
DvMF_1780  Aldehyde Dehydrogenase [KO:K00131] [EC:1.2.1.9]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dvm00020  Citrate cycle (TCA cycle)
dvm00030  Pentose phosphate pathway
dvm00500  Starch and sucrose metabolism
dvm00620  Pyruvate metabolism
dvm00640  Propanoate metabolism
KO pathway
ko00010   
LinkDB

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