KEGG   PATHWAY: eoh00030
Entry
eoh00030                    Pathway                                
Name
Pentose phosphate pathway - Escherichia coli O103:H2 12009 (EHEC)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eoh00030  Pentose phosphate pathway
eoh00030

Module
eoh_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:eoh00030]
eoh_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:eoh00030]
eoh_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:eoh00030]
eoh_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:eoh00030]
eoh_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:eoh00030]
eoh_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:eoh00030]
eoh_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:eoh00030]
Other DBs
GO: 0006098
Organism
Escherichia coli O103:H2 12009 (EHEC) [GN:eoh]
Gene
ECO103_0009  talB; transaldolase B [KO:K00616] [EC:2.2.1.2]
ECO103_0124  gcd; glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
ECO103_0685  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
ECO103_0755  ybhE; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
ECO103_1309  prsA; phosphoribosylpyrophosphate synthase [KO:K00948] [EC:2.7.6.1]
ECO103_1915  pfkB; 6-phosphofructokinase II [KO:K16370] [EC:2.7.1.11]
ECO103_2040  eda; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ECO103_2041  edd; 6-phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
ECO103_2042  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
ECO103_2508  gnd; gluconate-6-phosphate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
ECO103_2573  fbaB; fructose-bisphosphate aldolase, class I [KO:K11645] [EC:4.1.2.13]
ECO103_2973  talA; transaldolase A [KO:K00616] [EC:2.2.1.2]
ECO103_2974  tktB; transketolase 2, thiamin-binding [KO:K00615] [EC:2.2.1.1]
ECO103_3489  rpiA; ribose 5-phosphate isomerase RpiA, constitutive [KO:K01807] [EC:5.3.1.6]
ECO103_3500  fbaA; fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
ECO103_3510  yggF; predicted hexoseP phosphatase [KO:K02446] [EC:3.1.3.11]
ECO103_3514  tktA; transketolase 1, thiamin-binding [KO:K00615] [EC:2.2.1.1]
ECO103_4098  yhfW; predicted mutase [KO:K01839] [EC:5.4.2.7]
ECO103_4104  rpe; D-ribulose-5-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
ECO103_4159  gntK; gluconokinase 2 GntK, GNT I system [KO:K00851] [EC:2.7.1.12]
ECO103_4254  kdgK; ketodeoxygluconokinase KdgK [KO:K00874] [EC:2.7.1.45]
ECO103_4405  rbsK; ribokinase RbsK [KO:K00852] [EC:2.7.1.15]
ECO103_4603  glpX; fructose 1,6-bisphosphatase II GlpX [KO:K02446] [EC:3.1.3.11]
ECO103_4612  pfkA; 6-phosphofructokinase I [KO:K00850] [EC:2.7.1.11]
ECO103_4681  tiaE; 2-keto-D-gluconate reductase TiaE [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
ECO103_4773  pgi; glucosephosphate isomerase Pgi [KO:K01810] [EC:5.3.1.9]
ECO103_4843  rpiB; ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
ECO103_4847  phnN; ribose 1,5-bisphosphokinase PhnN [KO:K05774] [EC:2.7.4.23]
ECO103_5028  fbp; fructose-1,6-bisphosphatase I [KO:K03841] [EC:3.1.3.11]
ECO103_5242  deoC; 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked DeoC [KO:K01619] [EC:4.1.2.4]
ECO103_5244  deoB; phosphopentomutase DeoB [KO:K01839] [EC:5.4.2.7]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
eoh00010  Glycolysis / Gluconeogenesis
eoh00040  Pentose and glucuronate interconversions
eoh00052  Galactose metabolism
eoh00230  Purine metabolism
eoh00240  Pyrimidine metabolism
eoh00340  Histidine metabolism
eoh00630  Glyoxylate and dicarboxylate metabolism
eoh00750  Vitamin B6 metabolism
KO pathway
ko00030   

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