KEGG   PATHWAY: esp03030
Entry
esp03030                    Pathway                                
Name
DNA replication - Etheostoma spectabile (orangethroat darter)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
esp03030  DNA replication
esp03030

Organism
Etheostoma spectabile (orangethroat darter) [GN:esp]
Gene
116670153  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
116670600  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
116672186  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
116672400  pola1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
116672573  rpa1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
116673371  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
116675866  [KO:K03505]
116686273  [KO:K10740]
116686597  rfc4; replication factor C subunit 4 isoform X1 [KO:K10755]
116688584  mcm2; LOW QUALITY PROTEIN: DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
116689452  pcna; proliferating cell nuclear antigen [KO:K04802]
116689794  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
116690283  rfc5; replication factor C subunit 5 [KO:K10756]
116691341  dna2; LOW QUALITY PROTEIN: DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
116691729  rpa2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
116692476  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
116692984  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
116693473  [KO:K10740]
116694790  [KO:K03505]
116695141  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
116696617  pola2; DNA polymerase alpha subunit B [KO:K02321]
116696982  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
116697109  mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
116697779  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
116698491  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
116698754  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
116698790  [KO:K03504]
116699069  [KO:K04799] [EC:3.1.-.-]
116699490  [KO:K03504]
116699712  lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
116700221  [KO:K07466]
116700564  rfc3; replication factor C subunit 3 [KO:K10756]
116702369  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
116703104  rfc1; replication factor C subunit 1 [KO:K10754]
116703733  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
116705344  prim2; DNA primase large subunit [KO:K02685]
116706019  mcm3; LOW QUALITY PROTEIN: DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
116706666  rnaseh1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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