KEGG   PATHWAY: fda00020
Entry
fda00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium dauae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fda00020  Citrate cycle (TCA cycle)
fda00020

Module
fda_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fda00020]
fda_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fda00020]
fda_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fda00020]
fda_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fda00020]
fda_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fda00020]
Other DBs
GO: 0006099
Organism
Flavobacterium dauae [GN:fda]
Gene
NU10_01615  [KO:K00241]
NU10_01620  [KO:K00239] [EC:1.3.5.1]
NU10_01625  [KO:K00240] [EC:1.3.5.1]
NU10_02880  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NU10_02885  [KO:K00164] [EC:1.2.4.2]
NU10_03250  [KO:K00031] [EC:1.1.1.42]
NU10_04670  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NU10_05765  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NU10_05885  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NU10_06160  [KO:K27802]
NU10_06170  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NU10_06510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NU10_06660  [KO:K18118] [EC:2.8.3.18]
NU10_07420  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
NU10_07645  [KO:K00658] [EC:2.3.1.61]
NU10_08120  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NU10_09400  [KO:K00162] [EC:1.2.4.1]
NU10_10380  [KO:K01676] [EC:4.2.1.2]
NU10_10435  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NU10_11045  [KO:K01647] [EC:2.3.3.1]
NU10_12155  [KO:K00627] [EC:2.3.1.12]
NU10_12160  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fda00010  Glycolysis / Gluconeogenesis
fda00061  Fatty acid biosynthesis
fda00071  Fatty acid degradation
fda00190  Oxidative phosphorylation
fda00220  Arginine biosynthesis
fda00250  Alanine, aspartate and glutamate metabolism
fda00280  Valine, leucine and isoleucine degradation
fda00350  Tyrosine metabolism
fda00470  D-Amino acid metabolism
fda00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system