KEGG   PATHWAY: ffu00020
Entry
ffu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fulvia fulva
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ffu00020  Citrate cycle (TCA cycle)
ffu00020

Module
ffu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ffu00020]
ffu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ffu00020]
ffu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ffu00020]
ffu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ffu00020]
ffu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ffu00020]
Other DBs
GO: 0006099
Organism
Fulvia fulva [GN:ffu]
Gene
CLAFUR5_03437  Citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
CLAFUR5_00333  2-methylcitrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
CLAFUR5_11064  putative ATP-citrate synthase subunit 2 [KO:K01648] [EC:2.3.3.8]
CLAFUR5_11065  putative ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
CLAFUR5_12866  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CLAFUR5_04268  Isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
CLAFUR5_02333  Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial [KO:K00030] [EC:1.1.1.41]
CLAFUR5_12283  Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
CLAFUR5_05510  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
CLAFUR5_12852  Dihydrolipoyllysine-residue succinyltransferase, mitochondrial [KO:K00658] [EC:2.3.1.61]
CLAFUR5_09149  Dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
CLAFUR5_07354  Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CLAFUR5_01119  Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CLAFUR5_09935  Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CLAFUR5_08783  putative succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
CLAFUR5_00528  putative succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
CLAFUR5_04787  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
CLAFUR5_07312  Succinate dehydrogenase cytochrome b subunit, mitochondrial [KO:K00236]
CLAFUR5_03963  Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
CLAFUR5_01882  Fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
CLAFUR5_03872  Malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
CLAFUR5_06682  Malate dehydrogenase, cytoplasmic [KO:K00026] [EC:1.1.1.37]
CLAFUR5_12301  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CLAFUR5_00702  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CLAFUR5_06426  Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
CLAFUR5_10032  Pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
CLAFUR5_03674  Dihydrolipoyllysine-residue acetyltransferase, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ffu00010  Glycolysis / Gluconeogenesis
ffu00053  Ascorbate and aldarate metabolism
ffu00061  Fatty acid biosynthesis
ffu00062  Fatty acid elongation
ffu00071  Fatty acid degradation
ffu00190  Oxidative phosphorylation
ffu00220  Arginine biosynthesis
ffu00250  Alanine, aspartate and glutamate metabolism
ffu00280  Valine, leucine and isoleucine degradation
ffu00350  Tyrosine metabolism
ffu00470  D-Amino acid metabolism
ffu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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