KEGG   PATHWAY: gag00030
Entry
gag00030                    Pathway                                
Name
Pentose phosphate pathway - Glaciecola sp. 4H-3-7+YE-5
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gag00030  Pentose phosphate pathway
gag00030

Module
gag_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gag00030]
gag_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:gag00030]
gag_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gag00030]
gag_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gag00030]
gag_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:gag00030]
Other DBs
GO: 0006098
Organism
Glaciecola sp. 4H-3-7+YE-5 [GN:gag]
Gene
Glaag_3616  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Glaag_3438  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Glaag_3437  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
Glaag_2157  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Glaag_0725  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Glaag_1021  transketolase [KO:K00615] [EC:2.2.1.1]
Glaag_3615  transaldolase [KO:K00616] [EC:2.2.1.2]
Glaag_0856  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
Glaag_0859  PfkB domain protein [KO:K00852] [EC:2.7.1.15]
Glaag_2064  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
Glaag_1718  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Glaag_3436  6-phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
Glaag_3434  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Glaag_1631  KDPG and KHG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Glaag_2155  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
Glaag_0788  Quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
Glaag_1633  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
Glaag_3637  carbohydrate kinase, thermoresistant glucokinase family [KO:K00851] [EC:2.7.1.12]
Glaag_1630  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Glaag_2341  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Glaag_3494  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Glaag_3652  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Glaag_0427  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Glaag_1024  fructose-bisphosphate aldolase class-I [KO:K01623] [EC:4.1.2.13]
Glaag_0154  Inositol phosphatase/fructose-16-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Glaag_2174  phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
gag00010  Glycolysis / Gluconeogenesis
gag00040  Pentose and glucuronate interconversions
gag00052  Galactose metabolism
gag00230  Purine metabolism
gag00240  Pyrimidine metabolism
gag00340  Histidine metabolism
gag00630  Glyoxylate and dicarboxylate metabolism
gag00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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