KEGG   PATHWAY: gil00970
Entry
gil00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Gilvimarinus sp. DA14
Class
Genetic Information Processing; Translation
Pathway map
gil00970  Aminoacyl-tRNA biosynthesis
gil00970

Organism
Gilvimarinus sp. DA14 [GN:gil]
Gene
NHM04_00300  gltX; glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
NHM04_00305  [KO:K14218]
NHM04_00495  [KO:K01881] [EC:6.1.1.15]
NHM04_00610  serS; serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
NHM04_00800  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
NHM04_01185  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
NHM04_01200  [KO:K14233]
NHM04_01450  [KO:K01873] [EC:6.1.1.9]
NHM04_01740  [KO:K14233]
NHM04_01810  [KO:K01886] [EC:6.1.1.18]
NHM04_01815  cysS; cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
NHM04_01875  [KO:K14228]
NHM04_02505  [KO:K14237]
NHM04_02510  [KO:K14221]
NHM04_02660  [KO:K14221]
NHM04_02665  [KO:K14237]
NHM04_02795  [KO:K14237]
NHM04_03205  [KO:K14219]
NHM04_03245  [KO:K01867] [EC:6.1.1.2]
NHM04_03405  hisS; histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
NHM04_03515  [KO:K14228]
NHM04_03670  [KO:K14228]
NHM04_03675  [KO:K14222]
NHM04_04195  [KO:K14232]
NHM04_04200  [KO:K14219]
NHM04_04205  [KO:K14226]
NHM04_04245  [KO:K14220]
NHM04_04505  [KO:K14229]
NHM04_04510  [KO:K14229]
NHM04_04760  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
NHM04_04900  [KO:K14232]
NHM04_04915  pheT; phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
NHM04_04920  pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
NHM04_04940  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
NHM04_05195  [KO:K14230]
NHM04_05850  [KO:K14223]
NHM04_06050  [KO:K14219]
NHM04_06055  [KO:K14233]
NHM04_06095  [KO:K14225]
NHM04_06100  [KO:K14224]
NHM04_06105  [KO:K14225]
NHM04_06110  [KO:K14224]
NHM04_06680  argS; arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
NHM04_07290  [KO:K14218]
NHM04_07295  [KO:K14227]
NHM04_07345  [KO:K14228]
NHM04_07940  [KO:K14231]
NHM04_08220  ileS; isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
NHM04_08495  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
NHM04_11415  glyS; glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
NHM04_11420  glyQ; glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
NHM04_11485  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
NHM04_12030  [KO:K14219]
NHM04_12920  [KO:K14230]
NHM04_13075  tyrS; tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
NHM04_13085  [KO:K14227]
NHM04_13090  [KO:K14218]
NHM04_13195  [KO:K14234]
NHM04_13200  [KO:K14236]
NHM04_13205  [KO:K14225]
NHM04_13210  [KO:K14234]
NHM04_13220  [KO:K14235]
NHM04_14520  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
NHM04_14525  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
NHM04_14530  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
NHM04_14770  [KO:K14228]
NHM04_15095  [KO:K14230]
NHM04_15985  [KO:K14232]
NHM04_16145  leuS; leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
NHM04_16585  metG; methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
gil00250  Alanine, aspartate and glutamate metabolism
gil00260  Glycine, serine and threonine metabolism
gil00270  Cysteine and methionine metabolism
gil00290  Valine, leucine and isoleucine biosynthesis
gil00300  Lysine biosynthesis
gil00330  Arginine and proline metabolism
gil00340  Histidine metabolism
gil00380  Tryptophan metabolism
gil00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

DBGET integrated database retrieval system