KEGG   PATHWAY: gja03008
Entry
gja03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Gekko japonicus (Schlegel's Japanese gecko)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
gja03008  Ribosome biogenesis in eukaryotes
gja03008

Organism
Gekko japonicus (Schlegel's Japanese gecko) [GN:gja]
Gene
107105828  POP1; POP1 homolog, ribonuclease P/MRP subunit [KO:K01164] [EC:3.1.26.5]
107106066  UTP14A; UTP14A small subunit processome component [KO:K14567]
107106078  IMP4; IMP4 homolog, U3 small nucleolar ribonucleoprotein [KO:K14561]
107106120  XRN2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
107106532  NOB1; NIN1/PSMD8 binding protein 1 homolog [KO:K11883]
107106549  UTP4; UTP4, small subunit processome component [KO:K14548]
107106886  MDN1; midasin AAA ATPase 1 [KO:K14572]
107107031  NMD3; NMD3 ribosome export adaptor [KO:K07562]
107107166  EFL1; elongation factor like GTPase 1 [KO:K14536] [EC:3.6.5.-]
107107206  RCL1; RNA terminal phosphate cyclase like 1 [KO:K11108]
107107278  RIOK2; RIO kinase 2 [KO:K07179] [EC:2.7.11.1]
107107850  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
107108371  DROSHA; drosha ribonuclease III [KO:K03685] [EC:3.1.26.3]
107108413  XPO1; exportin 1 [KO:K14290]
107108765  LSG1; large 60S subunit nuclear export GTPase 1 [KO:K14539] [EC:3.6.1.-]
107109198  RPP25L; ribonuclease P/MRP subunit p25 like [KO:K14525] [EC:3.1.26.5]
107109220  PWP2; PWP2 periodic tryptophan protein homolog (yeast) [KO:K14558]
107109531  RPP30; ribonuclease P/MRP subunit p30 [KO:K03539] [EC:3.1.26.5]
107109556  SPATA5; spermatogenesis associated 5 [KO:K14575]
107109804  CSNK2B; casein kinase 2 beta [KO:K03115]
107110135  NAT10; N-acetyltransferase 10 [KO:K14521] [EC:2.3.1.-]
107110169  GNL2; G protein nucleolar 2 [KO:K14537]
107110647  BMS1; BMS1, ribosome biogenesis factor [KO:K14569]
107110654  RPP25; ribonuclease P/MRP subunit p25 [KO:K14525] [EC:3.1.26.5]
107110674  [KO:K03097] [EC:2.7.11.1]
107111526  NHP2; NHP2 ribonucleoprotein [KO:K11129]
107111742  NOP10; NOP10 ribonucleoprotein [KO:K11130]
107111857  WDR3; WD repeat domain 3 [KO:K14556]
107111970  RBM28; RNA binding motif protein 28 [KO:K14573]
107112361  XRN1; 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
107112456  UTP15; UTP15, small subunit processome component [KO:K14549]
107112492  SBDS; SBDS ribosome assembly guanine nucleotide exchange factor [KO:K14574]
107112783  AK6; adenylate kinase 6 [KO:K18532] [EC:2.7.4.3]
107112931  POP4; POP4 homolog, ribonuclease P/MRP subunit [KO:K03538] [EC:3.1.26.5]
107113316  NOP58; NOP58 ribonucleoprotein [KO:K14565]
107114013  NXT2; nuclear transport factor 2 like export factor 2 [KO:K14285]
107114132  CSNK2A2; casein kinase 2 alpha 2 [KO:K03097] [EC:2.7.11.1]
107114581  [KO:K14570] [EC:3.1.-.-]
107115206  NXF1; nuclear RNA export factor 1 [KO:K14284]
107115698  [KO:K03097] [EC:2.7.11.1]
107116017  RAN; RAN, member RAS oncogene family [KO:K07936]
107116255  [KO:K14570] [EC:3.1.-.-]
107116300  REXO2; RNA exonuclease 2 [KO:K13288] [EC:3.1.-.-]
107116806  EMG1; EMG1, N1-specific pseudouridine methyltransferase [KO:K14568] [EC:2.1.1.260]
107116814  REXO1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
107117165  SNU13; SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) [KO:K12845]
107117244  WDR36; WD repeat domain 36 [KO:K14554]
107117384  MPHOSPH10; M-phase phosphoprotein 10 [KO:K14559]
107117631  NOP56; NOP56 ribonucleoprotein [KO:K14564]
107117756  [KO:K14552]
107118097  POP7; POP7 homolog, ribonuclease P/MRP subunit [KO:K14527] [EC:3.1.26.5]
107118115  UTP18; UTP18, small subunit processome component [KO:K14553]
107118203  DKC1; dyskerin pseudouridine synthase 1 [KO:K11131] [EC:5.4.99.-]
107118327  FCF1; FCF1 rRNA-processing protein [KO:K14566]
107118379  RRP7A; ribosomal RNA processing 7 homolog A [KO:K14545]
107118472  RPP40; ribonuclease P/MRP subunit p40 [KO:K14530] [EC:3.1.26.5]
107120491  GTPBP4; GTP binding protein 4 [KO:K06943]
107120839  GNL3L; G protein nucleolar 3 like [KO:K14538]
107120971  RPP38; ribonuclease P/MRP subunit p38 [KO:K14523] [EC:3.1.26.5]
107121266  RIOK1; RIO kinase 1 [KO:K07178] [EC:2.7.11.1]
107121638  NVL; nuclear VCP-like [KO:K14571]
107121721  UTP6; UTP6, small subunit processome component [KO:K14557]
107121765  GNL3; G protein nucleolar 3 [KO:K14538]
107122016  FBL; fibrillarin [KO:K14563] [EC:2.1.1.-]
107123204  GAR1; GAR1 ribonucleoprotein [KO:K11128]
107123369  [KO:K14562]
107123640  HEATR1; HEAT repeat containing 1 [KO:K14550]
107124487  WDR43; WD repeat domain 43 [KO:K14546]
107124689  NOL6; nucleolar protein 6 [KO:K14544]
107125374  IMP3; IMP3, U3 small nucleolar ribonucleoprotein [KO:K14560]
107125834  TBL3; transducin beta like 3 [KO:K14555]
107125855  [KO:K14570] [EC:3.1.-.-]
107126102  POP5; POP5 homolog, ribonuclease P/MRP subunit [KO:K03537] [EC:3.1.26.5]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
gja03010  Ribosome
KO pathway
ko03008   

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