KEGG   PATHWAY: glj00020
Entry
glj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gloeobacter kilaueensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
glj00020  Citrate cycle (TCA cycle)
glj00020

Module
glj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:glj00020]
glj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:glj00020]
Other DBs
GO: 0006099
Organism
Gloeobacter kilaueensis [GN:glj]
Gene
GKIL_0019  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GKIL_0020  hdrB; CoB--CoM heterodisulfide reductase [KO:K00241]
GKIL_0757  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GKIL_0806  icd; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
GKIL_1636  gltA; citrate synthase [KO:K01659] [EC:2.3.3.5]
GKIL_1801  acnA; aconitate hydratase [KO:K27802]
GKIL_1807  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
GKIL_1808  pdhB; pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
GKIL_2446  aceF; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
GKIL_2775  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GKIL_2914  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
glj00010  Glycolysis / Gluconeogenesis
glj00061  Fatty acid biosynthesis
glj00071  Fatty acid degradation
glj00190  Oxidative phosphorylation
glj00220  Arginine biosynthesis
glj00250  Alanine, aspartate and glutamate metabolism
glj00280  Valine, leucine and isoleucine degradation
glj00350  Tyrosine metabolism
glj00470  D-Amino acid metabolism
glj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system