KEGG   PATHWAY: glu00020
Entry
glu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Glutamicibacter sp. ZJUTW
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
glu00020  Citrate cycle (TCA cycle)
glu00020

Module
glu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:glu00020]
glu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:glu00020]
glu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:glu00020]
glu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:glu00020]
glu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:glu00020]
Other DBs
GO: 0006099
Organism
Glutamicibacter sp. ZJUTW [GN:glu]
Gene
F0M17_10910  citrate synthase [KO:K01647] [EC:2.3.3.1]
F0M17_00785  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F0M17_10120  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F0M17_00790  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F0M17_03370  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F0M17_06135  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
F0M17_10260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F0M17_02990  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
F0M17_02985  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
F0M17_16565  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
F0M17_09030  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
F0M17_03715  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F0M17_03710  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F0M17_03725  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
F0M17_03720  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
F0M17_12560  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
F0M17_03915  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
F0M17_06980  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
F0M17_05945  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
F0M17_02585  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
F0M17_07720  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
F0M17_10265  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
glu00010  Glycolysis / Gluconeogenesis
glu00053  Ascorbate and aldarate metabolism
glu00061  Fatty acid biosynthesis
glu00071  Fatty acid degradation
glu00190  Oxidative phosphorylation
glu00220  Arginine biosynthesis
glu00250  Alanine, aspartate and glutamate metabolism
glu00280  Valine, leucine and isoleucine degradation
glu00350  Tyrosine metabolism
glu00470  D-Amino acid metabolism
glu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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