KEGG   PATHWAY: halj00020
Entry
halj00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Haloarcula sp. JP-L23
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
halj00020  Citrate cycle (TCA cycle)
halj00020

Module
halj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:halj00020]
halj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:halj00020]
halj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:halj00020]
halj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:halj00020]
halj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:halj00020]
Other DBs
GO: 0006099
Organism
Haloarcula sp. JP-L23 [GN:halj]
Gene
G9465_03510  citrate synthase [KO:K01647] [EC:2.3.3.1]
G9465_04440  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
G9465_17020  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
G9465_01785  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G9465_21770  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G9465_08780  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
G9465_08785  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
G9465_10305  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G9465_10310  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G9465_00360  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
G9465_11620  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
G9465_11625  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G9465_11635  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
G9465_11630  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
G9465_09445  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G9465_02650  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G9465_22470  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
G9465_23945  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
G9465_16375  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
G9465_01765  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
G9465_20715  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
G9465_01770  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
G9465_20710  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
G9465_01775  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
G9465_14690  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
G9465_14685  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
halj00010  Glycolysis / Gluconeogenesis
halj00053  Ascorbate and aldarate metabolism
halj00061  Fatty acid biosynthesis
halj00071  Fatty acid degradation
halj00190  Oxidative phosphorylation
halj00220  Arginine biosynthesis
halj00250  Alanine, aspartate and glutamate metabolism
halj00280  Valine, leucine and isoleucine degradation
halj00350  Tyrosine metabolism
halj00470  D-Amino acid metabolism
halj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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