hsa_var:1956v3 : No such data.
hsa_var:238v2 : No such data.

KEGG   VARIANT: 1956v1
Entry
1956v1                      Variant                                
Name
EGFR amplification
Type
Gain of function
Gene
EGFR  epidermal growth factor receptor [KO:K04361]
Organism
hsa_var Human gene variants (Homo sapiens)
Variation
amplification
ClinVar: 59680 59682
dbVar: nsv532206 nsv532208
Network
nt06210  ERK signaling (cancer)
nt06214  PI3K signaling (cancer)
nt06220  Calcium signaling (cancer)
nt06265  Bladder cancer
nt06273  Glioma
nt06526  MAPK signaling
nt06528  Calcium signaling
nt06530  PI3K signaling
Disease
H00014  Non-small cell lung cancer
H00022  Bladder cancer
H00042  Glioma
Reference
  Authors
Miller JJ, Wen PY
  Title
Emerging targeted therapies for glioma.
  Journal
Expert Opin Emerg Drugs 21:441-452 (2016)
DOI:10.1080/14728214.2016.1257609
Reference
  Authors
Szerlip NJ, Pedraza A, Chakravarty D, Azim M, McGuire J, Fang Y, Ozawa T, Holland EC, Huse JT, Jhanwar S, Leversha MA, Mikkelsen T, Brennan CW
  Title
Intratumoral heterogeneity of receptor tyrosine kinases EGFR and PDGFRA amplification in glioblastoma defines subpopulations with distinct growth factor response.
  Journal
Proc Natl Acad Sci U S A 109:3041-6 (2012)
DOI:10.1073/pnas.1114033109
Reference
  Authors
Sugano K, Kakizoe T.
  Title
Genetic alterations in bladder cancer and their clinical applications in molecular tumor staging.
  Journal
Nat Clin Pract Urol 3:642-52 (2006)
DOI:10.1038/ncpuro0649
Reference
  Authors
Wolff EM, Liang G, Jones PA.
  Title
Mechanisms of Disease: genetic and epigenetic alterations that drive bladder cancer.
  Journal
Nat Clin Pract Urol 2:502-10 (2005)
DOI:10.1038/ncpuro0318
LinkDB

KEGG   VARIANT: 1956v2
Entry
1956v2                      Variant                                
Name
EGFR mutation in non-small cell lung cancer
Type
Gain of function
Gene
EGFR  epidermal growth factor receptor [KO:K04361]
Organism
hsa_var Human gene variants (Homo sapiens)
Variation
exon 19 deletion
ClinVar: 177620
dbSNP: rs727504233
Variation
Variation
exon 20 insertion
ClinVar: 45263
dbSNP: rs1554350366
Variation
TKI-resistant mutation T790M
ClinVar: 16613
dbSNP: rs121434569
Network
nt06210  ERK signaling (cancer)
nt06214  PI3K signaling (cancer)
nt06220  Calcium signaling (cancer)
nt06266  Non-small cell lung cancer
nt06526  MAPK signaling
nt06528  Calcium signaling
nt06530  PI3K signaling
Disease
H00014  Non-small cell lung cancer
H00042  Glioma
Drug target
Afatinib (DG00717): D09733<JP/US>
Amivantamab: D11894<JP/US>
Aumolertinib (DG03209): D12258 D12259
Dacomitinib (DG01793): D10514<JP/US>
Erlotinib (DG00711): D04023<JP/US>
Firmonertinib (DG03322): D12956 D12957
Gefitinib: D01977<JP/US>
Lazertinib (DG03205): D11980 D12245<JP/US>
Mobocertinib (DG03148): D11969
Osimertinib: D10766<JP/US>
Pebezertinib: D12859
Sunvozertinib: D12506
Tigozertinib: D12730
Zipalertinib: D13062
Reference
  Authors
Toyooka S, Mitsudomi T, Soh J, Aokage K, Yamane M, Oto T, Kiura K, Miyoshi S
  Title
Molecular oncology of lung cancer.
  Journal
Gen Thorac Cardiovasc Surg 59:527-37 (2011)
DOI:10.1007/s11748-010-0743-3
Reference
  Authors
Lee DH
  Title
Treatments for EGFR-mutant non-small cell lung cancer (NSCLC): The road to a success, paved with failures.
  Journal
Pharmacol Ther 174:1-21 (2017)
DOI:10.1016/j.pharmthera.2017.02.001
Reference
  Authors
Lynch TJ, Bell DW, Sordella R, Gurubhagavatula S, Okimoto RA, Brannigan BW, Harris PL, Haserlat SM, Supko JG, Haluska FG, Louis DN, Christiani DC, Settleman J, Haber DA.
  Title
Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib.
  Journal
N Engl J Med 350:2129-39 (2004)
DOI:10.1056/NEJMoa040938
Reference
  Authors
Greulich H, Chen TH, Feng W, Janne PA, Alvarez JV, Zappaterra M, Bulmer SE, Frank DA, Hahn WC, Sellers WR, Meyerson M
  Title
Oncogenic transformation by inhibitor-sensitive and -resistant EGFR mutants.
  Journal
PLoS Med 2:e313 (2005)
DOI:10.1371/journal.pmed.0020313
Reference
  Authors
Yasuda H, Kobayashi S, Costa DB
  Title
EGFR exon 20 insertion mutations in non-small-cell lung cancer: preclinical data and clinical implications.
  Journal
Lancet Oncol 13:e23-31 (2012)
DOI:10.1016/S1470-2045(11)70129-2
Reference
  Authors
Sullivan I, Planchard D
  Title
Next-Generation EGFR Tyrosine Kinase Inhibitors for Treating EGFR-Mutant Lung Cancer beyond First Line.
  Journal
Front Med (Lausanne) 3:76 (2016)
DOI:10.3389/fmed.2016.00076
LinkDB

KEGG   VARIANT: 5156v1
Entry
5156v1                      Variant                                
Name
PDGFRA amplification
Type
Gain of function
Gene
PDGFRA  platelet derived growth factor receptor alpha [KO:K04363]
Organism
hsa_var Human gene variants (Homo sapiens)
Variation
Network
nt06210  ERK signaling (cancer)
nt06214  PI3K signaling (cancer)
nt06220  Calcium signaling (cancer)
nt06273  Glioma
nt06526  MAPK signaling
nt06528  Calcium signaling
nt06530  PI3K signaling
Disease
H00014  Non-small cell lung cancer
H00042  Glioma
Reference
PMID:1322795
  Authors
Fleming TP, Saxena A, Clark WC, Robertson JT, Oldfield EH, Aaronson SA, Ali IU
  Title
Amplification and/or overexpression of platelet-derived growth factor receptors and epidermal growth factor receptor in human glial tumors.
  Journal
Cancer Res 52:4550-3 (1992)
LinkDB

KEGG   VARIANT: 238v1
Entry
238v1                      Variant                                 
Name
EML4-ALK fusion
Type
Gain of function
Gene
ALK  ALK receptor tyrosine kinase [KO:K05119]
Organism
hsa_var Human gene variants (Homo sapiens)
Variation
inversion inv(2)(p21p23)
COSF: 473 463 474
Variation
TKI-resistant mutations I1171T C1156Y F1174L L1196M G1269A G1202R S1206Y
COSM: 4381100 99136 28061 99137 1169707 144250 4422789 144251 4422788
Network
nt06210  ERK signaling (cancer)
nt06214  PI3K signaling (cancer)
nt06219  JAK-STAT signaling (cancer)
nt06220  Calcium signaling (cancer)
nt06266  Non-small cell lung cancer
nt06528  Calcium signaling
nt06530  PI3K signaling
Disease
H00014  Non-small cell lung cancer
H00042  Glioma
Drug target
Alectinib (DG01625): D10450<JP/US>
Brigatinib: D10866<JP/US>
Ceritinib: D10551<JP/US>
Crizotinib: D09731<JP/US>
Ensartinib (DG02996): D11356
Lorlatinib: D11012<JP/US>
Reference
  Authors
Soda M, Choi YL, Enomoto M, Takada S, Yamashita Y, Ishikawa S, Fujiwara S, Watanabe H, Kurashina K, Hatanaka H, Bando M, Ohno S, Ishikawa Y, Aburatani H, Niki T, Sohara Y, Sugiyama Y, Mano H
  Title
Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer.
  Journal
Nature 448:561-6 (2007)
DOI:10.1038/nature05945
Reference
  Authors
Bayliss R, Choi J, Fennell DA, Fry AM, Richards MW
  Title
Molecular mechanisms that underpin EML4-ALK driven cancers and their response to targeted drugs.
  Journal
Cell Mol Life Sci 73:1209-24 (2016)
DOI:10.1007/s00018-015-2117-6
Reference
  Authors
Sasaki T, Okuda K, Zheng W, Butrynski J, Capelletti M, Wang L, Gray NS, Wilner K, Christensen JG, Demetri G, Shapiro GI, Rodig SJ, Eck MJ, Janne PA
  Title
The neuroblastoma-associated F1174L ALK mutation causes resistance to an ALK kinase inhibitor in ALK-translocated cancers.
  Journal
Cancer Res 70:10038-43 (2010)
DOI:10.1158/0008-5472.CAN-10-2956
LinkDB

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