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KEGG NETWORK

Background

The KEGG database has been developed by focusing on conservation and variation of genes and genomes among different organisms. The reference datasets of KEGG pathway maps, BRITE hierarchies and KEGG modules have been developed with the concept of functional orthologs (KOs), so that any genome can be mapped to these datasets for biological interpretation of higher-level functions. However, this approach is inadequate for understanding more detailed features caused by variation of genes and genomes within a species, especially for linking variation of human genes and genomes to pathogenicity and drug responses.


KEGG NETWORK Database

KEGG NETWORK represents a renewed attempt by KEGG to capture knowledge on diseases and drugs in terms of perturbed molecular networks (see Background of KEGG DISEASE). It accumulates variations of molecular interaction/reaction networks in Homo sapiens distinguishing gene variants and other perturbants. Entries of KEGG NETWORK are called "network elements" and identified by N numbers. For example, N00002 is a variation of MAPK (ERK) signaling network caused by BCR-ABL fusion kinase, which is related to chronic myeloid leukemia. The network element is defined by the sequence of human gene IDs including variants designated by 25v1, etc.

Network Variation Maps

The network variation map is computationally drawn for a collection of related network elements defined in the BRITE hierarchy KEGG Networks file, including both reference network elements that are represented in KEGG pathway maps and perturbed network elements caused by gene variants, viruses, drugs, etc. See, for example, network variation map nt06210, where reference network elements are shown in green and gene variants are marked in red.

06200   Cancer Network
Cancer Types


See Color codes of cancer types
06300   Endocrine Network
Endocrine Diseases
06100   Virus Network


Last updated: August 17, 2018
KEGG GenomeNet Kanehisa Laboratories