KEGG   PATHWAY: lcat03008
Entry
lcat03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Lemur catta (Ring-tailed lemur)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
lcat03008  Ribosome biogenesis in eukaryotes
lcat03008

Organism
Lemur catta (Ring-tailed lemur) [GN:lcat]
Gene
123620148  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
123620308  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
123621293  [KO:K14483]
123621294  [KO:K14483]
123621295  [KO:K14483]
123621296  [KO:K14483]
123621679  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
123622402  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
123622521  NOP56; nucleolar protein 56 [KO:K14564]
123622588  XRN2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
123622599  NXT1; NTF2-related export protein 1 [KO:K14285]
123622878  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
123622982  [KO:K14483]
123622983  [KO:K14483]
123623183  GNL3; guanine nucleotide-binding protein-like 3 [KO:K14538]
123623440  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
123623637  GTPBP4; GTP-binding protein 4 isoform X1 [KO:K06943]
123623714  [KO:K01982]
123623723  [KO:K14483]
123624240  POP4; ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
123624330  FBL; rRNA 2'-O-methyltransferase fibrillarin isoform X1 [KO:K14563] [EC:2.1.1.-]
123624470  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
123624623  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
123624927  [KO:K14483]
123625150  NOB1; RNA-binding protein NOB1 isoform X1 [KO:K11883]
123625161  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
123625262  CSNK2A2; casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
123625457  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
123625527  [KO:K01979]
123625528  [KO:K01979]
123625529  [KO:K01986]
123625530  [KO:K01979]
123625531  [KO:K01979]
123625532  [KO:K01979]
123625533  [KO:K01979]
123625534  [KO:K01979]
123625535  [KO:K01979]
123625536  [KO:K01979]
123625537  [KO:K01982]
123625538  [KO:K01986]
123625539  [KO:K01982]
123625540  [KO:K01982]
123625541  [KO:K01982]
123625542  [KO:K01982]
123625543  [KO:K01982]
123625544  [KO:K01982]
123625545  [KO:K01982]
123625546  [KO:K01982]
123625547  [KO:K01982]
123625548  [KO:K01986]
123625549  [KO:K01986]
123625550  [KO:K01986]
123625551  [KO:K01986]
123625552  [KO:K01986]
123625553  [KO:K01986]
123625554  [KO:K01986]
123625555  [KO:K01986]
123625769  RAN; GTP-binding nuclear protein Ran [KO:K07936]
123625924  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
123627148  [KO:K01981]
123627509  NVL; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
123627593  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
123627609  [KO:K01986]
123627610  [KO:K01986]
123627611  [KO:K01986]
123627628  [KO:K01979]
123627629  [KO:K01979]
123627630  [KO:K01979]
123627631  [KO:K01982]
123627632  [KO:K01982]
123627633  [KO:K01982]
123627801  [KO:K01981]
123627807  [KO:K01981]
123627818  [KO:K01981]
123627830  [KO:K01981]
123627842  [KO:K01981]
123627853  [KO:K01981]
123627865  [KO:K01981]
123627877  [KO:K01981]
123627889  [KO:K01981]
123627900  [KO:K01981]
123627910  [KO:K01981]
123627911  [KO:K01981]
123627912  [KO:K01981]
123627913  [KO:K01981]
123627914  [KO:K01981]
123627915  [KO:K01981]
123627916  [KO:K01981]
123627917  [KO:K01981]
123627918  [KO:K01981]
123627919  [KO:K01981]
123627921  [KO:K01981]
123627922  [KO:K01981]
123627923  [KO:K01981]
123627924  [KO:K01981]
123627925  [KO:K01981]
123627927  [KO:K01981]
123627928  [KO:K01981]
123627929  [KO:K01981]
123627930  [KO:K01981]
123627931  [KO:K01981]
123627932  [KO:K01981]
123627933  [KO:K01981]
123627934  [KO:K01981]
123627935  [KO:K01981]
123627936  [KO:K01981]
123627937  [KO:K01981]
123627938  [KO:K01981]
123627939  [KO:K01981]
123627940  [KO:K01981]
123627941  [KO:K01981]
123627943  [KO:K01981]
123627944  [KO:K01981]
123627945  [KO:K01981]
123627946  [KO:K01981]
123627947  [KO:K01981]
123627948  [KO:K01981]
123628015  GNL3L; guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
123628340  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [KO:K14567]
123628706  NXT2; NTF2-related export protein 2 isoform X1 [KO:K14285]
123628814  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
123628915  [KO:K14483]
123629156  [KO:K01981]
123629162  [KO:K01981]
123629173  [KO:K01981]
123629184  [KO:K01981]
123629195  [KO:K01981]
123629206  [KO:K01981]
123629213  [KO:K01981]
123629214  [KO:K01981]
123629215  [KO:K01981]
123629216  [KO:K01981]
123629217  [KO:K01981]
123629218  [KO:K01981]
123629219  [KO:K01981]
123629220  [KO:K01981]
123629221  [KO:K01981]
123629222  [KO:K01981]
123629223  [KO:K01981]
123629224  [KO:K01981]
123629225  [KO:K01981]
123629226  [KO:K01981]
123629227  [KO:K01981]
123629228  [KO:K01981]
123629229  [KO:K01981]
123629230  [KO:K01981]
123629231  [KO:K01981]
123629232  [KO:K01981]
123629233  [KO:K01981]
123629234  [KO:K01981]
123629235  [KO:K01981]
123629237  [KO:K01981]
123629238  [KO:K01981]
123629239  [KO:K01981]
123629240  [KO:K01981]
123629241  [KO:K01981]
123629242  [KO:K01981]
123629243  [KO:K01981]
123629244  [KO:K01981]
123629245  [KO:K01981]
123629246  [KO:K01981]
123629247  [KO:K01981]
123629248  [KO:K01981]
123629249  [KO:K01981]
123629250  [KO:K01981]
123629251  [KO:K01981]
123629252  [KO:K01981]
123629253  [KO:K01981]
123629254  [KO:K01981]
123629255  [KO:K01981]
123629256  [KO:K01981]
123629283  [KO:K01981]
123629289  [KO:K01981]
123629299  [KO:K01981]
123629300  [KO:K01981]
123629301  [KO:K01981]
123629302  [KO:K01981]
123629303  [KO:K01981]
123629304  [KO:K01981]
123629305  [KO:K01981]
123629306  [KO:K01981]
123629307  [KO:K01981]
123629308  [KO:K01981]
123629309  [KO:K01981]
123629310  [KO:K01981]
123629311  [KO:K01981]
123629312  [KO:K01981]
123629313  [KO:K01981]
123629314  [KO:K01981]
123629315  [KO:K01981]
123629316  [KO:K01981]
123629317  [KO:K01981]
123629318  [KO:K01981]
123629319  [KO:K01981]
123629320  [KO:K01981]
123629321  [KO:K01981]
123629322  [KO:K01981]
123629323  [KO:K01981]
123629325  [KO:K01981]
123629326  [KO:K01981]
123629327  [KO:K01981]
123629331  [KO:K01981]
123629343  [KO:K01981]
123629355  [KO:K01981]
123629356  [KO:K01981]
123629357  [KO:K01981]
123629358  [KO:K01981]
123629359  [KO:K01981]
123629360  [KO:K01981]
123629361  [KO:K01981]
123629362  [KO:K01981]
123629363  [KO:K01981]
123629364  [KO:K01981]
123629366  [KO:K01981]
123629367  [KO:K01981]
123629368  [KO:K01981]
123629369  [KO:K01981]
123629370  [KO:K01981]
123629371  [KO:K01981]
123629372  [KO:K01981]
123629378  [KO:K01981]
123629389  [KO:K01981]
123629395  [KO:K01981]
123629396  [KO:K01981]
123629397  [KO:K01981]
123629398  [KO:K01981]
123629399  [KO:K01981]
123629400  [KO:K01981]
123629402  [KO:K01981]
123629403  [KO:K01981]
123629404  [KO:K01981]
123629405  [KO:K01981]
123629406  [KO:K01981]
123629409  [KO:K01981]
123629421  [KO:K01981]
123629425  [KO:K01981]
123629426  [KO:K01981]
123629427  [KO:K01981]
123629428  [KO:K01981]
123629430  [KO:K01981]
123629431  [KO:K01981]
123629432  [KO:K01981]
123629433  [KO:K01981]
123629434  [KO:K01981]
123629435  [KO:K01981]
123629439  [KO:K01981]
123629451  [KO:K01981]
123629452  [KO:K01981]
123629453  [KO:K01981]
123629454  [KO:K01981]
123629455  [KO:K01981]
123629456  [KO:K01981]
123629457  [KO:K01981]
123629458  [KO:K01981]
123629459  [KO:K01981]
123629460  [KO:K01981]
123629461  [KO:K01981]
123629465  [KO:K01981]
123629476  [KO:K01981]
123629477  [KO:K01981]
123629478  [KO:K01981]
123629479  [KO:K01981]
123629480  [KO:K01981]
123629481  [KO:K01981]
123629482  [KO:K01981]
123629483  [KO:K01981]
123629484  [KO:K01981]
123629485  [KO:K01981]
123629486  [KO:K01981]
123629491  [KO:K01981]
123629501  [KO:K01981]
123629502  [KO:K01981]
123629503  [KO:K01981]
123629537  [KO:K01981]
123629538  [KO:K01981]
123629539  [KO:K01981]
123629540  [KO:K01981]
123629541  [KO:K01981]
123629548  [KO:K01981]
123629554  [KO:K01981]
123629555  [KO:K01981]
123629556  [KO:K01981]
123629557  [KO:K01981]
123629558  [KO:K01981]
123629559  [KO:K01981]
123629560  [KO:K01981]
123629561  [KO:K01981]
123629568  [KO:K01981]
123629571  [KO:K01981]
123629572  [KO:K01981]
123629573  [KO:K01981]
123629574  [KO:K01981]
123629575  [KO:K01981]
123629576  [KO:K01981]
123629585  [KO:K01981]
123629588  [KO:K01981]
123629589  [KO:K01981]
123629590  [KO:K01981]
123629591  [KO:K01981]
123629592  [KO:K01981]
123629593  [KO:K01981]
123629602  [KO:K01981]
123629604  [KO:K01981]
123629605  [KO:K01981]
123629606  [KO:K01981]
123629607  [KO:K01981]
123629608  [KO:K01981]
123629609  [KO:K01981]
123629618  [KO:K01981]
123629619  [KO:K01981]
123629620  [KO:K01981]
123629621  [KO:K01981]
123629647  [KO:K01981]
123629657  [KO:K01981]
123629658  [KO:K01981]
123629659  [KO:K01981]
123629660  [KO:K01981]
123629661  [KO:K01981]
123629663  [KO:K01981]
123629664  [KO:K01981]
123629672  [KO:K01981]
123629673  [KO:K01981]
123629674  [KO:K01981]
123629675  [KO:K01981]
123629676  [KO:K01981]
123629677  [KO:K01981]
123629678  [KO:K01981]
123629684  [KO:K01981]
123629685  [KO:K01981]
123629686  [KO:K01981]
123629687  [KO:K01981]
123629691  [KO:K01986]
123629693  [KO:K01979]
123629695  [KO:K01982]
123629697  [KO:K01986]
123629699  [KO:K01979]
123629700  [KO:K01982]
123629703  [KO:K01986]
123629705  [KO:K01982]
123629706  [KO:K01981]
123629707  [KO:K01981]
123629713  [KO:K01981]
123629714  [KO:K01981]
123629715  [KO:K01981]
123629716  [KO:K01981]
123629722  [KO:K01981]
123629723  [KO:K01981]
123629726  [KO:K01981]
123629730  [KO:K01981]
123629731  [KO:K01981]
123629732  [KO:K01981]
123629734  [KO:K01986]
123629735  [KO:K01979]
123629737  [KO:K01986]
123629738  [KO:K01979]
123629739  [KO:K01986]
123629740  [KO:K01979]
123629741  [KO:K01982]
123630045  [KO:K01981]
123630051  [KO:K01981]
123630061  [KO:K01981]
123630062  [KO:K01981]
123630063  [KO:K01981]
123630064  [KO:K01981]
123630065  [KO:K01981]
123630066  [KO:K01981]
123630067  [KO:K01981]
123630068  [KO:K01981]
123630069  [KO:K01981]
123630071  [KO:K01981]
123630072  [KO:K01981]
123630073  [KO:K01981]
123630074  [KO:K01981]
123630075  [KO:K01981]
123630076  [KO:K01981]
123630082  [KO:K01981]
123630094  [KO:K01981]
123630105  [KO:K01981]
123630123  XRN1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
123630231  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
123630408  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
123630798  PWP2; periodic tryptophan protein 2 homolog isoform X1 [KO:K14558]
123631021  [KO:K14483]
123631022  [KO:K14483]
123631023  [KO:K14483]
123631028  [KO:K14483]
123631370  TBL3; transducin beta-like protein 3 [KO:K14555]
123631641  POP7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
123631736  CSNK2B; casein kinase II subunit beta [KO:K03115]
123632648  SBDS; ribosome maturation protein SBDS [KO:K14574]
123632902  REXO1; LOW QUALITY PROTEIN: RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
123633071  MDN1; midasin [KO:K14572]
123633504  [KO:K01981]
123633510  [KO:K01981]
123633521  [KO:K01981]
123633533  [KO:K01981]
123633545  [KO:K01981]
123633557  [KO:K01981]
123633566  [KO:K01981]
123633567  [KO:K01981]
123633568  [KO:K01981]
123633569  [KO:K01981]
123633570  [KO:K01981]
123633572  [KO:K01981]
123633573  [KO:K01981]
123633580  [KO:K01981]
123633592  [KO:K01981]
123633594  [KO:K14483]
123633596  [KO:K14483]
123633603  [KO:K01981]
123633614  [KO:K01981]
123633625  [KO:K01981]
123633636  [KO:K01981]
123633647  [KO:K01981]
123633659  [KO:K01981]
123633671  [KO:K01981]
123633677  [KO:K01981]
123633683  [KO:K01981]
123633694  [KO:K01981]
123633707  [KO:K01981]
123633718  [KO:K01981]
123633730  [KO:K01981]
123633741  [KO:K01981]
123633752  [KO:K01981]
123633764  [KO:K01981]
123633776  [KO:K01981]
123633788  [KO:K01981]
123633794  [KO:K01981]
123633800  [KO:K01981]
123633812  [KO:K01981]
123633816  [KO:K01981]
123633817  [KO:K01981]
123633818  [KO:K01981]
123633819  [KO:K01981]
123633820  [KO:K01981]
123633821  [KO:K01981]
123633822  [KO:K01981]
123633823  [KO:K01981]
123633824  [KO:K01981]
123633825  [KO:K01981]
123633826  [KO:K01981]
123633828  [KO:K01981]
123633829  [KO:K01981]
123633830  [KO:K01981]
123635110  WDR3; WD repeat-containing protein 3 isoform X1 [KO:K14556]
123635746  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
123636086  [KO:K14483]
123636759  WDR43; WD repeat-containing protein 43 [KO:K14546]
123636948  XPO1; exportin-1 isoform X1 [KO:K14290]
123637516  [KO:K14483]
123637518  [KO:K14483]
123637519  [KO:K14483]
123637520  [KO:K14483]
123637521  [KO:K14483]
123637522  [KO:K14483]
123637985  FBLL1; rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
123638069  TCOF1; treacle protein [KO:K14562]
123638193  RPP40; ribonuclease P protein subunit p40 isoform X1 [KO:K14530] [EC:3.1.26.5]
123638247  RIOK1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
123638591  SPATA5; ATPase family protein 2 homolog [KO:K14575]
123638937  [KO:K01981]
123638951  [KO:K14483]
123639967  [KO:K14567]
123640088  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
123640276  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
123640296  SNU13; NHP2-like protein 1 [KO:K12845]
123640785  [KO:K01981]
123640893  [KO:K01981]
123641287  NXF1; nuclear RNA export factor 1 [KO:K14284]
123641644  REXO2; oligoribonuclease, mitochondrial isoform X1 [KO:K13288] [EC:3.1.-.-]
123641936  [KO:K14538]
123642579  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
123643876  NOP58; nucleolar protein 58 isoform X1 [KO:K14565]
123643928  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1 [KO:K14561]
123644031  WDR75; WD repeat-containing protein 75 [KO:K14552]
123644291  [KO:K14483]
123644511  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
123644566  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
123645063  EFL1; elongation factor-like GTPase 1 isoform X1 [KO:K14536] [EC:3.6.5.-]
123646194  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
123646208  NOL6; nucleolar protein 6 isoform X1 [KO:K14544]
123646661  FCF1; rRNA-processing protein FCF1 homolog [KO:K14566]
123646671  RCL1; RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
123646830  [KO:K14483]
123646831  [KO:K14483]
123647018  RBM28; RNA-binding protein 28 isoform X1 [KO:K14573]
123647791  [KO:K14483]
123647793  [KO:K14483]
123648059  RIOK2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
123648204  WDR36; WD repeat-containing protein 36 [KO:K14554]
123648332  AK6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
123648377  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
123648619  DROSHA; ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
123648669  [KO:K01981]
123648781  [KO:K14483]
123648782  [KO:K14483]
123649523  [KO:K14483]
123649894  BMS1; ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
123650417  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
123650529  [KO:K01986]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
lcat03010  Ribosome
KO pathway
ko03008   

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