KEGG   PATHWAY: liw00020
Entry
liw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Listeria ivanovii WSLC3009
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
liw00020  Citrate cycle (TCA cycle)
liw00020

Module
liw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:liw00020]
liw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:liw00020]
Other DBs
GO: 0006099
Organism
Listeria ivanovii WSLC3009 [GN:liw]
Gene
AX25_08125  citrate synthase [KO:K01659] [EC:2.3.3.5]
AX25_08560  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AX25_08120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AX25_05405  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AX25_07090  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AX25_11805  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AX25_05500  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AX25_05390  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
AX25_05395  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AX25_05400  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
AX25_04205  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
liw00010  Glycolysis / Gluconeogenesis
liw00061  Fatty acid biosynthesis
liw00071  Fatty acid degradation
liw00190  Oxidative phosphorylation
liw00220  Arginine biosynthesis
liw00250  Alanine, aspartate and glutamate metabolism
liw00280  Valine, leucine and isoleucine degradation
liw00350  Tyrosine metabolism
liw00470  D-Amino acid metabolism
liw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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