KEGG   PATHWAY: magx00010
Entry
magx00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Magnetospirillum sp. XM-1
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
magx00010  Glycolysis / Gluconeogenesis
magx00010

Module
magx_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:magx00010]
magx_M00002  Glycolysis, core module involving three-carbon compounds [PATH:magx00010]
magx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:magx00010]
magx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:magx00010]
Other DBs
GO: 0006096 0006094
Organism
Magnetospirillum sp. XM-1 [GN:magx]
Gene
XM1_2873  glk; Glucokinase [KO:K00845] [EC:2.7.1.2]
XM1_0566  pgi; glucosephosphate isomerase [KO:K01810] [EC:5.3.1.9]
XM1_3356  pfkA; 6-phosphofructokinase 1 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
XM1_0291  putative Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
XM1_3478  fbp; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
XM1_2008  glpX; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
XM1_1595  glpX; fructose 1,6-bisphosphatase II(Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase,12-321) [KO:K11532] [EC:3.1.3.11 3.1.3.37]
XM1_2006  fda; fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
XM1_3602  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
XM1_0165  gapA; glyceraldehyde-3-phosphate dehydrogenase A [KO:K00134] [EC:1.2.1.12]
XM1_0164  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
XM1_3976  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
XM1_1233  gpmI; phosphoglycero mutase III, cofactor-independent(Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent,11-512) [KO:K15633] [EC:5.4.2.12]
XM1_3598  eno; enolase [KO:K01689] [EC:4.2.1.11]
XM1_3954  pyk; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
XM1_3464  ppdK; pyruvate phosphate dikinase [KO:K01006] [EC:2.7.9.1]
XM1_3337  acoA; acetoin dehydrogenase E1 component (TPP-dependent alpha subunit) [KO:K00161] [EC:1.2.4.1]
XM1_3336  acoB; acetoin dehydrogenase E1 component (TPP-dependent beta subunit) [KO:K00162] [EC:1.2.4.1]
XM1_3335  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
XM1_1387  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes(Dihydrolipoamide dehydrogenase,1-468) [KO:K00382] [EC:1.8.1.4]
XM1_3332  lpdV; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
XM1_2696  ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
XM1_2900  putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
XM1_2901  putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
XM1_3403  betB; NAD+-dependent betaine aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
XM1_1680  Putative NAD-dependent aldehyde dehydrogenase(Aldehyde/histidinol dehydrogenase;  [KO:K00128] [EC:1.2.1.3]
XM1_2053  acsA; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
XM1_1543  Putative Acyl-coenzyme A synthetase/AMP-(Fatty) acid ligase(AMP-dependent synthetase/ligase,58-466) [KO:K01895] [EC:6.2.1.1]
XM1_0417  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
XM1_0248  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
XM1_4456  pckG; Phosphoenolpyruvate carboxykinase pckG [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
magx00020  Citrate cycle (TCA cycle)
magx00030  Pentose phosphate pathway
magx00500  Starch and sucrose metabolism
magx00620  Pyruvate metabolism
magx00640  Propanoate metabolism
magx00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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