KEGG   PATHWAY: maic00020
Entry
maic00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium aichiense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
maic00020  Citrate cycle (TCA cycle)
maic00020

Module
maic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:maic00020]
maic_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:maic00020]
maic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:maic00020]
maic_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:maic00020]
maic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:maic00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium aichiense [GN:maic]
Gene
MAIC_08450  citrate synthase [KO:K01647] [EC:2.3.3.1]
MAIC_08500  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MAIC_24320  acnA; aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MAIC_11910  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MAIC_41320  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MAIC_49170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MAIC_36090  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MAIC_36080  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MAIC_09440  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MAIC_09430  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MAIC_12300  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MAIC_52870  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MAIC_12290  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MAIC_52880  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MAIC_12320  putative succinate dehydrogenase (cytochrome b-556 subunit) SdhC [KO:K00241]
MAIC_12310  sdhD; succinate dehydrogenase [KO:K00242]
MAIC_43940  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MAIC_19440  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MAIC_18240  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MAIC_53670  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MAIC_34170  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MAIC_51140  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MAIC_51150  acoB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MAIC_51160  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MAIC_33600  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
maic00010  Glycolysis / Gluconeogenesis
maic00053  Ascorbate and aldarate metabolism
maic00061  Fatty acid biosynthesis
maic00071  Fatty acid degradation
maic00190  Oxidative phosphorylation
maic00220  Arginine biosynthesis
maic00250  Alanine, aspartate and glutamate metabolism
maic00280  Valine, leucine and isoleucine degradation
maic00350  Tyrosine metabolism
maic00470  D-Amino acid metabolism
maic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system