KEGG   PATHWAY: mbe00020
Entry
mbe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Drepanopeziza brunnea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbe00020  Citrate cycle (TCA cycle)
mbe00020

Module
mbe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mbe00020]
mbe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbe00020]
mbe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbe00020]
mbe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbe00020]
mbe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbe00020]
Other DBs
GO: 0006099
Organism
Drepanopeziza brunnea [GN:mbe]
Gene
MBM_07270  methylcitrate synthase precursor [KO:K01647] [EC:2.3.3.1]
MBM_05564  hypothetical protein [KO:K01647] [EC:2.3.3.1]
MBM_07398  ATP citrate lyase, subunit 2 [KO:K01648] [EC:2.3.3.8]
MBM_07399  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
MBM_07430  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MBM_07906  isocitrate dehydrogenase NADP [KO:K00031] [EC:1.1.1.42]
MBM_04850  hypothetical protein [KO:K00030] [EC:1.1.1.41]
MBM_01696  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
MBM_04113  oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
MBM_06323  hypothetical protein [KO:K00658] [EC:2.3.1.61]
MBM_06865  hypothetical protein [KO:K00382] [EC:1.8.1.4]
MBM_08595  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
MBM_00957  succinyl-CoA ligase alpha-chain [KO:K01899] [EC:6.2.1.4 6.2.1.5]
MBM_04342  ATP-specific succinyl-CoA synthetase beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
MBM_01461  succinate dehydrogenase subunit A [KO:K00234] [EC:1.3.5.1]
MBM_04777  succinate dehydrogenase iron sulfur protein [KO:K00235] [EC:1.3.5.1]
MBM_08479  succinate dehydrogenase cytochrome b subunit [KO:K00236]
MBM_03493  hypothetical protein [KO:K00237]
MBM_07329  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MBM_01251  hypothetical protein [KO:K00026] [EC:1.1.1.37]
MBM_08185  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
MBM_02540  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MBM_06441  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MBM_09918  hypothetical protein [KO:K00161] [EC:1.2.4.1]
MBM_07536  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
MBM_00708  dihydrolipoamide acetyltransferase component E2 of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbe00010  Glycolysis / Gluconeogenesis
mbe00053  Ascorbate and aldarate metabolism
mbe00061  Fatty acid biosynthesis
mbe00062  Fatty acid elongation
mbe00071  Fatty acid degradation
mbe00190  Oxidative phosphorylation
mbe00220  Arginine biosynthesis
mbe00250  Alanine, aspartate and glutamate metabolism
mbe00280  Valine, leucine and isoleucine degradation
mbe00350  Tyrosine metabolism
mbe00470  D-Amino acid metabolism
mbe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system