KEGG   PATHWAY: mcoc03030
Entry
mcoc03030                   Pathway                                
Name
DNA replication - Mastomys coucha (southern multimammate mouse)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mcoc03030  DNA replication
mcoc03030

Organism
Mastomys coucha (southern multimammate mouse) [GN:mcoc]
Gene
116068122  Pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
116068285  Rfc5; replication factor C subunit 5 [KO:K10756]
116068508  Rfc2; replication factor C subunit 2 [KO:K10755]
116068616  Mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
116068823  Rfc3; replication factor C subunit 3 isoform X1 [KO:K10756]
116069273  Pold2; DNA polymerase delta subunit 2 [KO:K02328]
116069587  Mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
116069597  [KO:K10742] [EC:5.6.2.3 3.1.-.-]
116069738  Rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
116071045  Rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
116075142  Dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
116075948  Prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
116078699  Rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
116079777  Pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
116079969  Rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
116084535  Rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
116085622  Mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
116085750  Rfc4; replication factor C subunit 4 [KO:K10755]
116086777  Pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
116088225  Mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
116088269  Prim2; DNA primase large subunit isoform X1 [KO:K02685]
116090975  Pcna; proliferating cell nuclear antigen [KO:K04802]
116096114  Pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
116096772  Rpa2; replication protein A 32 kDa subunit [KO:K10739]
116098571  Rpa3; replication protein A 14 kDa subunit [KO:K10740]
116098617  Mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
116098782  Ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
116099116  Pole4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
116099232  Mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
116101660  Lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
116102136  Pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
116102636  Pold3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
116103328  Pold4; DNA polymerase delta subunit 4 [KO:K03505]
116103402  Rnaseh2c; ribonuclease H2 subunit C isoform X1 [KO:K10745]
116103424  Pola2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
116103548  Fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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