KEGG   PATHWAY: mdi01100
Entry
mdi01100          Global    Pathway                                
Name
Metabolic pathways - Methylorubrum extorquens DM4
Class
Pathway map
mdi01100  Metabolic pathways
mdi01100

Module
mdi_M00002  Glycolysis, core module involving three-carbon compounds [PATH:mdi01100]
mdi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mdi01100]
mdi_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:mdi01100]
mdi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:mdi01100]
mdi_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:mdi01100]
mdi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:mdi01100]
mdi_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:mdi01100]
mdi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mdi01100]
mdi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mdi01100]
mdi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mdi01100]
mdi_M00015  Proline biosynthesis, glutamate => proline [PATH:mdi01100]
mdi_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:mdi01100]
mdi_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:mdi01100]
mdi_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:mdi01100]
mdi_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:mdi01100]
mdi_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:mdi01100]
mdi_M00021  Cysteine biosynthesis, serine => cysteine [PATH:mdi01100]
mdi_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:mdi01100]
mdi_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:mdi01100]
mdi_M00026  Histidine biosynthesis, PRPP => histidine [PATH:mdi01100]
mdi_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:mdi01100]
mdi_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:mdi01100]
mdi_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:mdi01100]
mdi_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:mdi01100]
mdi_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:mdi01100]
mdi_M00082  Fatty acid biosynthesis, initiation [PATH:mdi01100]
mdi_M00083  Fatty acid biosynthesis, elongation [PATH:mdi01100]
mdi_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:mdi01100]
mdi_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:mdi01100]
mdi_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:mdi01100]
mdi_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:mdi01100]
mdi_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:mdi01100]
mdi_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:mdi01100]
mdi_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:mdi01100]
mdi_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:mdi01100]
mdi_M00140  C1-unit interconversion, prokaryotes [PATH:mdi01100]
mdi_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:mdi01100]
mdi_M00149  Succinate dehydrogenase, prokaryotes [PATH:mdi01100]
mdi_M00151  Cytochrome bc1 complex respiratory unit [PATH:mdi01100]
mdi_M00155  Cytochrome c oxidase, prokaryotes [PATH:mdi01100]
mdi_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:mdi01100]
mdi_M00168  CAM (Crassulacean acid metabolism), dark [PATH:mdi01100]
mdi_M00169  CAM (Crassulacean acid metabolism), light [PATH:mdi01100]
mdi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mdi01100]
mdi_M00346  Formaldehyde assimilation, serine pathway [PATH:mdi01100]
mdi_M00417  Cytochrome o ubiquinol oxidase [PATH:mdi01100]
mdi_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:mdi01100]
mdi_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:mdi01100]
mdi_M00549  UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:mdi01100]
mdi_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:mdi01100]
mdi_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:mdi01100]
mdi_M00595  Sulfur oxidation, SOX system, thiosulfate => sulfate [PATH:mdi01100]
mdi_M00621  Glycine cleavage system [PATH:mdi01100]
mdi_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:mdi01100]
mdi_M00793  dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha [PATH:mdi01100]
mdi_M00844  Arginine biosynthesis, ornithine => arginine [PATH:mdi01100]
mdi_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:mdi01100]
mdi_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:mdi01100]
mdi_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:mdi01100]
mdi_M00909  UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:mdi01100]
mdi_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:mdi01100]
mdi_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:mdi01100]
mdi_M00970  Proline degradation, proline => glutamate [PATH:mdi01100]
mdi_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:mdi01100]
mdi_M00988  PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:mdi01100]
Organism
Methylorubrum extorquens DM4 [GN:mdi]
Related
pathway
mdi00010  Glycolysis / Gluconeogenesis
mdi00020  Citrate cycle (TCA cycle)
mdi00030  Pentose phosphate pathway
mdi00040  Pentose and glucuronate interconversions
mdi00051  Fructose and mannose metabolism
mdi00052  Galactose metabolism
mdi00053  Ascorbate and aldarate metabolism
mdi00061  Fatty acid biosynthesis
mdi00071  Fatty acid degradation
mdi00074  Mycolic acid biosynthesis
mdi00130  Ubiquinone and other terpenoid-quinone biosynthesis
mdi00190  Oxidative phosphorylation
mdi00220  Arginine biosynthesis
mdi00230  Purine metabolism
mdi00240  Pyrimidine metabolism
mdi00250  Alanine, aspartate and glutamate metabolism
mdi00260  Glycine, serine and threonine metabolism
mdi00261  Monobactam biosynthesis
mdi00270  Cysteine and methionine metabolism
mdi00280  Valine, leucine and isoleucine degradation
mdi00290  Valine, leucine and isoleucine biosynthesis
mdi00300  Lysine biosynthesis
mdi00310  Lysine degradation
mdi00330  Arginine and proline metabolism
mdi00332  Carbapenem biosynthesis
mdi00340  Histidine metabolism
mdi00350  Tyrosine metabolism
mdi00360  Phenylalanine metabolism
mdi00361  Chlorocyclohexane and chlorobenzene degradation
mdi00362  Benzoate degradation
mdi00364  Fluorobenzoate degradation
mdi00380  Tryptophan metabolism
mdi00400  Phenylalanine, tyrosine and tryptophan biosynthesis
mdi00401  Novobiocin biosynthesis
mdi00405  Phenazine biosynthesis
mdi00410  beta-Alanine metabolism
mdi00430  Taurine and hypotaurine metabolism
mdi00450  Selenocompound metabolism
mdi00460  Cyanoamino acid metabolism
mdi00470  D-Amino acid metabolism
mdi00480  Glutathione metabolism
mdi00500  Starch and sucrose metabolism
mdi00520  Amino sugar and nucleotide sugar metabolism
mdi00521  Streptomycin biosynthesis
mdi00523  Polyketide sugar unit biosynthesis
mdi00525  Acarbose and validamycin biosynthesis
mdi00540  Lipopolysaccharide biosynthesis
mdi00541  Biosynthesis of various nucleotide sugars
mdi00543  Exopolysaccharide biosynthesis
mdi00550  Peptidoglycan biosynthesis
mdi00552  Teichoic acid biosynthesis
mdi00561  Glycerolipid metabolism
mdi00562  Inositol phosphate metabolism
mdi00564  Glycerophospholipid metabolism
mdi00572  Arabinogalactan biosynthesis - Mycobacterium
mdi00620  Pyruvate metabolism
mdi00622  Xylene degradation
mdi00623  Toluene degradation
mdi00625  Chloroalkane and chloroalkene degradation
mdi00626  Naphthalene degradation
mdi00627  Aminobenzoate degradation
mdi00630  Glyoxylate and dicarboxylate metabolism
mdi00633  Nitrotoluene degradation
mdi00640  Propanoate metabolism
mdi00643  Styrene degradation
mdi00650  Butanoate metabolism
mdi00660  C5-Branched dibasic acid metabolism
mdi00670  One carbon pool by folate
mdi00680  Methane metabolism
mdi00710  Carbon fixation by Calvin cycle
mdi00720  Other carbon fixation pathways
mdi00730  Thiamine metabolism
mdi00740  Riboflavin metabolism
mdi00750  Vitamin B6 metabolism
mdi00760  Nicotinate and nicotinamide metabolism
mdi00770  Pantothenate and CoA biosynthesis
mdi00780  Biotin metabolism
mdi00785  Lipoic acid metabolism
mdi00790  Folate biosynthesis
mdi00791  Atrazine degradation
mdi00860  Porphyrin metabolism
mdi00900  Terpenoid backbone biosynthesis
mdi00906  Carotenoid biosynthesis
mdi00907  Pinene, camphor and geraniol degradation
mdi00909  Sesquiterpenoid and triterpenoid biosynthesis
mdi00910  Nitrogen metabolism
mdi00920  Sulfur metabolism
mdi00930  Caprolactam degradation
mdi00946  Degradation of flavonoids
mdi00999  Biosynthesis of various plant secondary metabolites
mdi01040  Biosynthesis of unsaturated fatty acids
mdi01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   

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