KEGG   PATHWAY: mdi00240
Entry
mdi00240                    Pathway                                
Name
Pyrimidine metabolism - Methylorubrum extorquens DM4
Class
Metabolism; Nucleotide metabolism
Pathway map
mdi00240  Pyrimidine metabolism
mdi00240

Module
mdi_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:mdi00240]
Other DBs
GO: 0006220 0006213
Organism
Methylorubrum extorquens DM4 [GN:mdi]
Gene
METDI0437  dcd; 2'-deoxycytidine 5'-triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
METDI0594  carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit [KO:K01956] [EC:6.3.5.5]
METDI1569  carB; carbamoyl phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
METDI1585  nrd; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, large subunit [KO:K00525] [EC:1.17.4.1]
METDI1881  [KO:K06016] [EC:3.5.1.6 3.5.1.87]
METDI2136  [KO:K11751] [EC:3.1.3.5 3.6.1.45]
METDI2152  [KO:K06287] [EC:3.6.1.-]
METDI2183  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
METDI2187  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
METDI2213  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
METDI2397  [KO:K01485] [EC:3.5.4.1 3.5.4.21]
METDI2408  [KO:K09024] [EC:1.5.1.-]
METDI2409  rutD; putative enzyme of alternative pyrimidine degradation pathway, putative alpha/beta hydrolase [KO:K09023] [EC:3.5.1.-]
METDI2410  rutC; enzyme of alternative pyrimidine degradation pathway [KO:K09021]
METDI2411  rutB; enzyme of alternative pyrimidine degradation pathway [KO:K09020] [EC:3.5.1.110]
METDI2412  [KO:K09018] [EC:1.14.99.46]
METDI2778  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
METDI2841  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
METDI2875  pyrD; dihydro-orotate oxidase, FMN-linked [KO:K00254] [EC:1.3.5.2]
METDI2901  cmk; cytidine monophosphate (CMP) kinase [KO:K00945] [EC:2.7.4.25]
METDI3143  [KO:K09769] [EC:3.1.4.16]
METDI3363  [KO:K06287] [EC:3.6.1.-]
METDI3419  thyA; thymidylate synthetase [KO:K00560] [EC:2.1.1.45]
METDI3733  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
METDI3736  cdd; cytidine deaminase (cytidine aminohydrolase) [KO:K01489] [EC:3.5.4.5]
METDI3793  [KO:K09024] [EC:1.5.1.-]
METDI3982  pyrE; orotate phosphoribosyltransferase (OPRT) (OPRTase) [KO:K00762] [EC:2.4.2.10]
METDI4104  pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
METDI4105  pyrC; putative dihydroorotase-like protein [KO:K01465] [EC:3.5.2.3]
METDI4716  [KO:K06016] [EC:3.5.1.6 3.5.1.87]
METDI4902  mazG; nucleoside triphosphate pyrophosphohydrolase MazG [KO:K04765] [EC:3.6.1.9]
METDI5192  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
METDI5236  surE; 5'-nucleotidase surE (Nucleoside 5'-monophosphate phosphohydrolase) [KO:K03787] [EC:3.1.3.5 3.1.3.6]
METDI5306  pyrC; putative dihydroorotase-like protein [KO:K01465] [EC:3.5.2.3]
METDI5309  [KO:K06952] [EC:3.1.3.89]
METDI5711  pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
mdi00030  Pentose phosphate pathway
mdi00220  Arginine biosynthesis
mdi00250  Alanine, aspartate and glutamate metabolism
mdi00280  Valine, leucine and isoleucine degradation
mdi00410  beta-Alanine metabolism
KO pathway
ko00240   

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