KEGG   PATHWAY: mdi00010
Entry
mdi00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Methylorubrum extorquens DM4
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mdi00010  Glycolysis / Gluconeogenesis
mdi00010

Module
mdi_M00002  Glycolysis, core module involving three-carbon compounds [PATH:mdi00010]
mdi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mdi00010]
mdi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mdi00010]
Other DBs
GO: 0006096 0006094
Organism
Methylorubrum extorquens DM4 [GN:mdi]
Gene
METDI0283  [KO:K13953] [EC:1.1.1.1]
METDI1126  cbbF; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
METDI1375  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
METDI1921  [KO:K01834] [EC:5.4.2.11]
METDI1962  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
METDI1985  exa; Quinoprotein ethanol dehydrogenase precursor (QEDH) [KO:K00114] [EC:1.1.2.8]
METDI2307  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
METDI2316  lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
METDI2672  [KO:K01834] [EC:5.4.2.11]
METDI2729  glpX; fructose 1,6-bisphosphatase II [KO:K11532] [EC:3.1.3.11 3.1.3.37]
METDI3147  gapA; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
METDI3149  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
METDI3150  cbbA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
METDI3234  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
METDI3295  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
METDI3510  pyk; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
METDI3551  eno; enolase [KO:K01689] [EC:4.2.1.11]
METDI3553  pdhA; pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
METDI3554  pdhB; pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
METDI3556  pdhC; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
METDI3557  lpd; dihydrolipoamide dehydrogenase, E3 Component of Pyruvate dehydrogenase multienzyme complex [KO:K00382] [EC:1.8.1.4]
METDI3642  galM; Aldose-1-epimerase (Galactose mutarotase) [KO:K01785] [EC:5.1.3.3]
METDI3656  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
METDI3661  ppdK; Pyruvate phosphate dikinase (Pyruvate, orthophosphate dikinase) [KO:K01006] [EC:2.7.9.1]
METDI4227  aldA; aldehyde dehydrogenase, chloroacetaldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
METDI4540  [KO:K13953] [EC:1.1.1.1]
METDI5075  [KO:K00382] [EC:1.8.1.4]
METDI5119  [KO:K15778] [EC:5.4.2.8 5.4.2.2]
METDI5141  mxaI; Methanol dehydrogenase subunit 2 precursor (MDH small beta subunit) [KO:K14029] [EC:1.1.2.7]
METDI5145  mxaF; Methanol dehydrogenase subunit 1 precursor (MDH large alpha subunit) (MEDH) [KO:K14028] [EC:1.1.2.7]
METDI5432  [KO:K00845] [EC:2.7.1.2]
METDI5469  [KO:K01895] [EC:6.2.1.1]
METDI5539  [KO:K13810] [EC:2.2.1.2 5.3.1.9]
METDI5716  tpiA; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mdi00020  Citrate cycle (TCA cycle)
mdi00030  Pentose phosphate pathway
mdi00500  Starch and sucrose metabolism
mdi00620  Pyruvate metabolism
mdi00640  Propanoate metabolism
mdi00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   

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