KEGG   PATHWAY: mema00020
Entry
mema00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanoculleus bourgensis MAB1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mema00020  Citrate cycle (TCA cycle)
mema00020

Module
mema_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mema00020]
Other DBs
GO: 0006099
Organism
Methanoculleus bourgensis MAB1 [GN:mema]
Gene
MMAB1_0295  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MMAB1_0296  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MMAB1_0563  [KO:K00382] [EC:1.8.1.4]
MMAB1_0889  porB; Pyruvate synthase subunit porB [KO:K00170] [EC:1.2.7.1]
MMAB1_0890  porA; Pyruvate synthase subunit porA [KO:K00169] [EC:1.2.7.1]
MMAB1_0891  porD; Pyruvate synthase subunit porD [KO:K00171] [EC:1.2.7.1]
MMAB1_0893  [KO:K00172] [EC:1.2.7.1]
MMAB1_1116  mdhA; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MMAB1_1165  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
MMAB1_1166  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
MMAB1_1167  korC; 2-oxoglutarate synthase subunit korC [KO:K00177] [EC:1.2.7.3]
MMAB1_1168  korB; 2-oxoglutarate synthase subunit korB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MMAB1_1169  korA; 2-oxoglutarate synthase subunit korA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MMAB1_1170  [KO:K00176] [EC:1.2.7.3]
MMAB1_1172  [KO:K01678] [EC:4.2.1.2]
MMAB1_1173  [KO:K01677] [EC:4.2.1.2]
MMAB1_1696  [KO:K00169] [EC:1.2.7.1]
MMAB1_1699  porC; Pyruvate synthase subunit porC [KO:K00172] [EC:1.2.7.1]
MMAB1_1700  porD; Pyruvate synthase subunit porD [KO:K00171] [EC:1.2.7.1]
MMAB1_2526  pycB; Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
MMAB1_2527  accC; acetyl-CoA carboxylase, biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
MMAB1_3447  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mema00010  Glycolysis / Gluconeogenesis
mema00061  Fatty acid biosynthesis
mema00071  Fatty acid degradation
mema00190  Oxidative phosphorylation
mema00220  Arginine biosynthesis
mema00250  Alanine, aspartate and glutamate metabolism
mema00280  Valine, leucine and isoleucine degradation
mema00350  Tyrosine metabolism
mema00470  D-Amino acid metabolism
mema00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system