KEGG   PATHWAY: mhor00020
Entry
mhor00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosarcina horonobensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhor00020  Citrate cycle (TCA cycle)
mhor00020

Module
mhor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhor00020]
mhor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhor00020]
Other DBs
GO: 0006099
Organism
Methanosarcina horonobensis [GN:mhor]
Gene
MSHOH_3877  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
MSHOH_0397  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
MSHOH_3876  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MSHOH_0396  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MSHOH_1141  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSHOH_1140  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSHOH_2394  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
MSHOH_2393  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MSHOH_2983  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MSHOH_3396  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSHOH_3547  Pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
MSHOH_3548  Pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
MSHOH_4070  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MSHOH_2346  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSHOH_4071  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSHOH_4068  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MSHOH_4069  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhor00010  Glycolysis / Gluconeogenesis
mhor00061  Fatty acid biosynthesis
mhor00071  Fatty acid degradation
mhor00190  Oxidative phosphorylation
mhor00220  Arginine biosynthesis
mhor00250  Alanine, aspartate and glutamate metabolism
mhor00280  Valine, leucine and isoleucine degradation
mhor00350  Tyrosine metabolism
mhor00470  D-Amino acid metabolism
mhor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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