KEGG   PATHWAY: ming00030
Entry
ming00030                   Pathway                                
Name
Pentose phosphate pathway - Macadamia integrifolia (macadamia nut)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ming00030  Pentose phosphate pathway
ming00030

Module
ming_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ming00030]
ming_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ming00030]
ming_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ming00030]
ming_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ming00030]
Other DBs
GO: 0006098
Organism
Macadamia integrifolia (macadamia nut) [GN:ming]
Gene
122076978  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
122093592  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
122088261  glucose-6-phosphate 1-dehydrogenase 6, cytoplasmic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
122077084  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
122078229  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
122092924  LOW QUALITY PROTEIN: glucose-6-phosphate 1-dehydrogenase-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
122093627  glucose-6-phosphate 1-dehydrogenase, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
122075416  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
122059112  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
122059737  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
122075719  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
122076325  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
122077364  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
122080115  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
122074790  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
122078990  6-phosphogluconate dehydrogenase, decarboxylating 2-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
122058479  6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
122087281  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
122090347  ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [KO:K01783] [EC:5.1.3.1]
122075329  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
122089392  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
122091121  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
122081854  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
122057655  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
122075749  transaldolase 2-like [KO:K00616] [EC:2.2.1.2]
122080105  transaldolase-like [KO:K00616] [EC:2.2.1.2]
122087114  transaldolase isoform X1 [KO:K00616] [EC:2.2.1.2]
122075891  ribose-5-phosphate isomerase A-like [KO:K01807] [EC:5.3.1.6]
122078424  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
122090728  probable ribose-5-phosphate isomerase 4, chloroplastic isoform X1 [KO:K01807] [EC:5.3.1.6]
122090753  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
122080010  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
122069309  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
122084135  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
122072797  ribokinase [KO:K00852] [EC:2.7.1.15]
122077124  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
122079760  phosphoglucomutase, cytoplasmic-like isoform X1 [KO:K01835] [EC:5.4.2.2]
122082489  LOW QUALITY PROTEIN: phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
122060044  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
122058204  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
122082681  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
122086655  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase isoform X1 [KO:K00131] [EC:1.2.1.9]
122063141  gluconokinase-like [KO:K00851] [EC:2.7.1.12]
122065625  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
122065989  fructose-bisphosphate aldolase, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
122066163  fructose-bisphosphate aldolase, cytoplasmic isozyme 1-like [KO:K01623] [EC:4.1.2.13]
122093714  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
122094746  fructose-bisphosphate aldolase 1, cytoplasmic [KO:K01623] [EC:4.1.2.13]
122082385  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
122083383  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
122086949  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
122088023  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
122091621  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
122072756  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
122057139  fructose-1,6-bisphosphatase, cytosolic-like [KO:K03841] [EC:3.1.3.11]
122086023  fructose-1,6-bisphosphatase 1, chloroplastic [KO:K03841] [EC:3.1.3.11]
122077189  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
122092114  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
122092360  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
122092673  ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
122084486  ATP-dependent 6-phosphofructokinase 7-like [KO:K00850] [EC:2.7.1.11]
122084774  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
122086868  ATP-dependent 6-phosphofructokinase 4, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
122059366  ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
122059882  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
122094407  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
122084515  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
122073723  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ming00010  Glycolysis / Gluconeogenesis
ming00040  Pentose and glucuronate interconversions
ming00052  Galactose metabolism
ming00230  Purine metabolism
ming00240  Pyrimidine metabolism
ming00340  Histidine metabolism
ming00630  Glyoxylate and dicarboxylate metabolism
ming00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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