KEGG   PATHWAY: mlx03030
Entry
mlx03030                    Pathway                                
Name
DNA replication - Mirounga leonina (Southern elephant seal)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mlx03030  DNA replication
mlx03030

Organism
Mirounga leonina (Southern elephant seal) [GN:mlx]
Gene
117998211  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
117998263  POLD1; DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
117998750  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
117999391  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
117999504  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
118000988  PRIM2; DNA primase large subunit isoform X1 [KO:K02685]
118001205  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
118001358  [KO:K03506] [EC:2.7.7.7]
118002591  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
118003909  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
118005166  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
118005320  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
118006924  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
118007286  [KO:K03469] [EC:3.1.26.4]
118007345  [KO:K03469] [EC:3.1.26.4]
118007831  POLA1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
118007935  POLE4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
118008691  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
118009464  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
118009517  RFC3; replication factor C subunit 3 [KO:K10756]
118010607  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
118011072  [KO:K10756]
118011269  PCNA; proliferating cell nuclear antigen [KO:K04802]
118012498  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
118014800  MCM4; DNA replication licensing factor MCM4 isoform X1 [KO:K02212] [EC:5.6.2.3]
118015555  [KO:K10740]
118015627  [KO:K10740]
118015925  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
118016041  POLA2; DNA polymerase alpha subunit B [KO:K02321]
118016061  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
118016122  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
118016914  [KO:K03111]
118017783  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
118017922  [KO:K10742] [EC:5.6.2.3 3.1.-.-]
118018354  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
118018522  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
118018664  [KO:K10742] [EC:5.6.2.3 3.1.-.-]
118019808  RPA2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
118020805  RPA3; replication protein A 14 kDa subunit [KO:K10740]
118021179  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
118023070  [KO:K03111]
118024492  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
118025212  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
118026090  RPA4; LOW QUALITY PROTEIN: replication protein A 30 kDa subunit [KO:K10741]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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