KEGG   PATHWAY: mmab00020
Entry
mmab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mucilaginibacter mali
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmab00020  Citrate cycle (TCA cycle)
mmab00020

Module
mmab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mmab00020]
mmab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmab00020]
mmab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmab00020]
mmab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmab00020]
mmab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmab00020]
Other DBs
GO: 0006099
Organism
Mucilaginibacter mali [GN:mmab]
Gene
HQ865_16105  citrate synthase [KO:K01647] [EC:2.3.3.1]
HQ865_15020  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HQ865_06940  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HQ865_10670  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HQ865_22470  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HQ865_09410  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
HQ865_22475  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HQ865_03140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HQ865_18190  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HQ865_17830  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HQ865_14230  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HQ865_22875  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HQ865_22880  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HQ865_22870  succinate dehydrogenase cytochrome b subunit [KO:K00241]
HQ865_24215  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HQ865_07300  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HQ865_02140  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HQ865_25415  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HQ865_19135  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HQ865_24185  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HQ865_19130  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmab00010  Glycolysis / Gluconeogenesis
mmab00053  Ascorbate and aldarate metabolism
mmab00061  Fatty acid biosynthesis
mmab00071  Fatty acid degradation
mmab00190  Oxidative phosphorylation
mmab00220  Arginine biosynthesis
mmab00250  Alanine, aspartate and glutamate metabolism
mmab00280  Valine, leucine and isoleucine degradation
mmab00350  Tyrosine metabolism
mmab00470  D-Amino acid metabolism
mmab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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